Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CDCA5 (cell division cycle associated 5)

Identity

Other aliasSORORIN
HGNC (Hugo) CDCA5
LocusID (NCBI) 113130
Atlas_Id 51637
Location 11q13.1  [Link to chromosome band 11q13]
Location_base_pair Starts at 64844927 and ends at 64851615 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
RAD51 (15q15.1) / CDCA5 (11q13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CDCA5   14626
Cards
Entrez_Gene (NCBI)CDCA5  113130  cell division cycle associated 5
AliasesSORORIN
GeneCards (Weizmann)CDCA5
Ensembl hg19 (Hinxton)ENSG00000146670 [Gene_View]  chr11:64844927-64851615 [Contig_View]  CDCA5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000146670 [Gene_View]  chr11:64844927-64851615 [Contig_View]  CDCA5 [Vega]
ICGC DataPortalENSG00000146670
TCGA cBioPortalCDCA5
AceView (NCBI)CDCA5
Genatlas (Paris)CDCA5
WikiGenes113130
SOURCE (Princeton)CDCA5
Genetics Home Reference (NIH)CDCA5
Genomic and cartography
GoldenPath hg19 (UCSC)CDCA5  -     chr11:64844927-64851615 -  11q13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CDCA5  -     11q13.1   [Description]    (hg38-Dec_2013)
EnsemblCDCA5 - 11q13.1 [CytoView hg19]  CDCA5 - 11q13.1 [CytoView hg38]
Mapping of homologs : NCBICDCA5 [Mapview hg19]  CDCA5 [Mapview hg38]
OMIM609374   
Gene and transcription
Genbank (Entrez)AK093670 AK291490 AL832526 BC011000 CN332525
RefSeq transcript (Entrez)NM_080668
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_167190 NW_004929380
Consensus coding sequences : CCDS (NCBI)CDCA5
Cluster EST : UnigeneHs.434886 [ NCBI ]
CGAP (NCI)Hs.434886
Alternative Splicing GalleryENSG00000146670
Gene ExpressionCDCA5 [ NCBI-GEO ]   CDCA5 [ EBI - ARRAY_EXPRESS ]   CDCA5 [ SEEK ]   CDCA5 [ MEM ]
Gene Expression Viewer (FireBrowse)CDCA5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)113130
GTEX Portal (Tissue expression)CDCA5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96FF9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96FF9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96FF9
Splice isoforms : SwissVarQ96FF9
PhosPhoSitePlusQ96FF9
Domains : Interpro (EBI)Sororin   
Domain families : Pfam (Sanger)Sororin (PF09666)   
Domain families : Pfam (NCBI)pfam09666   
Conserved Domain (NCBI)CDCA5
DMDM Disease mutations113130
Blocks (Seattle)CDCA5
SuperfamilyQ96FF9
Human Protein AtlasENSG00000146670
Peptide AtlasQ96FF9
HPRD13016
IPIIPI00984545   
Protein Interaction databases
DIP (DOE-UCLA)Q96FF9
IntAct (EBI)Q96FF9
FunCoupENSG00000146670
BioGRIDCDCA5
STRING (EMBL)CDCA5
ZODIACCDCA5
Ontologies - Pathways
QuickGOQ96FF9
Ontology : AmiGOG1/S transition of mitotic cell cycle  chromosome, centromeric region  nuclear chromatin  chromatin binding  protein binding  nucleus  nucleus  nucleoplasm  nucleoplasm  chromosome  cytoplasm  cytosol  plasma membrane  double-strand break repair  sister chromatid cohesion  mitotic sister chromatid cohesion  mitotic sister chromatid cohesion  mitotic nuclear division  mitotic chromosome condensation  mitotic metaphase plate congression  cohesin complex  positive regulation of exit from mitosis  cell division  regulation of cohesin localization to chromatin  positive regulation of cell cycle phase transition  
Ontology : EGO-EBIG1/S transition of mitotic cell cycle  chromosome, centromeric region  nuclear chromatin  chromatin binding  protein binding  nucleus  nucleus  nucleoplasm  nucleoplasm  chromosome  cytoplasm  cytosol  plasma membrane  double-strand break repair  sister chromatid cohesion  mitotic sister chromatid cohesion  mitotic sister chromatid cohesion  mitotic nuclear division  mitotic chromosome condensation  mitotic metaphase plate congression  cohesin complex  positive regulation of exit from mitosis  cell division  regulation of cohesin localization to chromatin  positive regulation of cell cycle phase transition  
Pathways : KEGGMicroRNAs in cancer   
NDEx NetworkCDCA5
Atlas of Cancer Signalling NetworkCDCA5
Wikipedia pathwaysCDCA5
Orthology - Evolution
OrthoDB113130
GeneTree (enSembl)ENSG00000146670
Phylogenetic Trees/Animal Genes : TreeFamCDCA5
HOVERGENQ96FF9
HOGENOMQ96FF9
Homologs : HomoloGeneCDCA5
Homology/Alignments : Family Browser (UCSC)CDCA5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDCA5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDCA5
dbVarCDCA5
ClinVarCDCA5
1000_GenomesCDCA5 
Exome Variant ServerCDCA5
ExAC (Exome Aggregation Consortium)CDCA5 (select the gene name)
Genetic variants : HAPMAP113130
Genomic Variants (DGV)CDCA5 [DGVbeta]
DECIPHER (Syndromes)11:64844927-64851615  ENSG00000146670
CONAN: Copy Number AnalysisCDCA5 
Mutations
ICGC Data PortalCDCA5 
TCGA Data PortalCDCA5 
Broad Tumor PortalCDCA5
OASIS PortalCDCA5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCDCA5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCDCA5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CDCA5
DgiDB (Drug Gene Interaction Database)CDCA5
DoCM (Curated mutations)CDCA5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CDCA5 (select a term)
intoGenCDCA5
Cancer3DCDCA5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609374   
Orphanet
MedgenCDCA5
Genetic Testing Registry CDCA5
NextProtQ96FF9 [Medical]
TSGene113130
GENETestsCDCA5
Huge Navigator CDCA5 [HugePedia]
snp3D : Map Gene to Disease113130
BioCentury BCIQCDCA5
ClinGenCDCA5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD113130
Chemical/Pharm GKB GenePA26278
Clinical trialCDCA5
Miscellaneous
canSAR (ICR)CDCA5 (select the gene name)
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCDCA5
EVEXCDCA5
GoPubMedCDCA5
iHOPCDCA5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:55:51 CEST 2017

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