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CDCA5 (cell division cycle associated 5)

Identity

Alias (NCBI)SORORIN
HGNC (Hugo) CDCA5
HGNC Alias namesororin
LocusID (NCBI) 113130
Atlas_Id 51637
Location 11q13.1  [Link to chromosome band 11q13]
Location_base_pair Starts at 65077453 and ends at 65084040 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RAD51 (15q15.1) / CDCA5 (11q13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)CDCA5   14626
Cards
Entrez_Gene (NCBI)CDCA5    cell division cycle associated 5
AliasesSORORIN
GeneCards (Weizmann)CDCA5
Ensembl hg19 (Hinxton)ENSG00000146670 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000146670 [Gene_View]  ENSG00000146670 [Sequence]  chr11:65077453-65084040 [Contig_View]  CDCA5 [Vega]
ICGC DataPortalENSG00000146670
TCGA cBioPortalCDCA5
AceView (NCBI)CDCA5
Genatlas (Paris)CDCA5
SOURCE (Princeton)CDCA5
Genetics Home Reference (NIH)CDCA5
Genomic and cartography
GoldenPath hg38 (UCSC)CDCA5  -     chr11:65077453-65084040 -  11q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CDCA5  -     11q13.1   [Description]    (hg19-Feb_2009)
GoldenPathCDCA5 - 11q13.1 [CytoView hg19]  CDCA5 - 11q13.1 [CytoView hg38]
ImmunoBaseENSG00000146670
Genome Data Viewer NCBICDCA5 [Mapview hg19]  
OMIM609374   
Gene and transcription
Genbank (Entrez)AB231703 AK093670 AK291490 AL832526 BC011000
RefSeq transcript (Entrez)NM_080668
Consensus coding sequences : CCDS (NCBI)CDCA5
Gene ExpressionCDCA5 [ NCBI-GEO ]   CDCA5 [ EBI - ARRAY_EXPRESS ]   CDCA5 [ SEEK ]   CDCA5 [ MEM ]
Gene Expression Viewer (FireBrowse)CDCA5 [ Firebrowse - Broad ]
GenevisibleExpression of CDCA5 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)113130
GTEX Portal (Tissue expression)CDCA5
Human Protein AtlasENSG00000146670-CDCA5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96FF9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96FF9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96FF9
PhosPhoSitePlusQ96FF9
Domains : Interpro (EBI)Sororin   
Domain families : Pfam (Sanger)Sororin (PF09666)   
Domain families : Pfam (NCBI)pfam09666   
Conserved Domain (NCBI)CDCA5
SuperfamilyQ96FF9
AlphaFold pdb e-kbQ96FF9   
Human Protein Atlas [tissue]ENSG00000146670-CDCA5 [tissue]
HPRD13016
Protein Interaction databases
DIP (DOE-UCLA)Q96FF9
IntAct (EBI)Q96FF9
BioGRIDCDCA5
STRING (EMBL)CDCA5
ZODIACCDCA5
Ontologies - Pathways
QuickGOQ96FF9
Ontology : AmiGOmitotic cell cycle  chromosome, centromeric region  chromatin  chromatin binding  protein binding  nucleus  nucleus  nucleoplasm  nucleoplasm  chromosome  cytoplasm  cytosol  double-strand break repair  double-strand break repair  mitotic sister chromatid cohesion  mitotic sister chromatid cohesion  mitotic sister chromatid cohesion  mitotic chromosome condensation  mitotic metaphase plate congression  mitotic metaphase plate congression  positive regulation of exit from mitosis  positive regulation of exit from mitosis  protein-containing complex binding  cell division  regulation of cohesin loading  regulation of cohesin loading  
Ontology : EGO-EBImitotic cell cycle  chromosome, centromeric region  chromatin  chromatin binding  protein binding  nucleus  nucleus  nucleoplasm  nucleoplasm  chromosome  cytoplasm  cytosol  double-strand break repair  double-strand break repair  mitotic sister chromatid cohesion  mitotic sister chromatid cohesion  mitotic sister chromatid cohesion  mitotic chromosome condensation  mitotic metaphase plate congression  mitotic metaphase plate congression  positive regulation of exit from mitosis  positive regulation of exit from mitosis  protein-containing complex binding  cell division  regulation of cohesin loading  regulation of cohesin loading  
Pathways : KEGGMicroRNAs in cancer   
NDEx NetworkCDCA5
Atlas of Cancer Signalling NetworkCDCA5
Wikipedia pathwaysCDCA5
Orthology - Evolution
OrthoDB113130
GeneTree (enSembl)ENSG00000146670
Phylogenetic Trees/Animal Genes : TreeFamCDCA5
Homologs : HomoloGeneCDCA5
Homology/Alignments : Family Browser (UCSC)CDCA5
Gene fusions - Rearrangements
Fusion : QuiverCDCA5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDCA5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDCA5
dbVarCDCA5
ClinVarCDCA5
MonarchCDCA5
1000_GenomesCDCA5 
Exome Variant ServerCDCA5
GNOMAD BrowserENSG00000146670
Varsome BrowserCDCA5
ACMGCDCA5 variants
VarityQ96FF9
Genomic Variants (DGV)CDCA5 [DGVbeta]
DECIPHERCDCA5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCDCA5 
Mutations
ICGC Data PortalCDCA5 
TCGA Data PortalCDCA5 
Broad Tumor PortalCDCA5
OASIS PortalCDCA5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCDCA5  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCDCA5
Mutations and Diseases : HGMDCDCA5
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCDCA5
DgiDB (Drug Gene Interaction Database)CDCA5
DoCM (Curated mutations)CDCA5
CIViC (Clinical Interpretations of Variants in Cancer)CDCA5
Cancer3DCDCA5
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609374   
Orphanet
DisGeNETCDCA5
MedgenCDCA5
Genetic Testing Registry CDCA5
NextProtQ96FF9 [Medical]
GENETestsCDCA5
Target ValidationCDCA5
Huge Navigator CDCA5 [HugePedia]
ClinGenCDCA5
Clinical trials, drugs, therapy
MyCancerGenomeCDCA5
Protein Interactions : CTDCDCA5
Pharm GKB GenePA26278
PharosQ96FF9
Clinical trialCDCA5
Miscellaneous
canSAR (ICR)CDCA5
HarmonizomeCDCA5
DataMed IndexCDCA5
Probes
Litterature
PubMed57 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCDCA5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:03:10 CEST 2021

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