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CDCA7 (cell division cycle associated 7)

Identity

Alias_symbol (synonym)FLJ14736
JPO1
Other aliasICF3
HGNC (Hugo) CDCA7
LocusID (NCBI) 83879
Atlas_Id 421
Location 2q31.1  [Link to chromosome band 2q31]
Location_base_pair Starts at 173354833 and ends at 173368990 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CDCA7 (2q31.1) / CDCA7 (2q31.1)PCNX2 (1q42.2) / CDCA7 (2q31.1)PCNXL2 1q42.2 / CDCA7 2q31.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CDCA7   14628
Cards
Entrez_Gene (NCBI)CDCA7  83879  cell division cycle associated 7
AliasesICF3; JPO1
GeneCards (Weizmann)CDCA7
Ensembl hg19 (Hinxton)ENSG00000144354 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000144354 [Gene_View]  chr2:173354833-173368990 [Contig_View]  CDCA7 [Vega]
ICGC DataPortalENSG00000144354
TCGA cBioPortalCDCA7
AceView (NCBI)CDCA7
Genatlas (Paris)CDCA7
WikiGenes83879
SOURCE (Princeton)CDCA7
Genetics Home Reference (NIH)CDCA7
Genomic and cartography
GoldenPath hg38 (UCSC)CDCA7  -     chr2:173354833-173368990 +  2q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CDCA7  -     2q31.1   [Description]    (hg19-Feb_2009)
EnsemblCDCA7 - 2q31.1 [CytoView hg19]  CDCA7 - 2q31.1 [CytoView hg38]
Mapping of homologs : NCBICDCA7 [Mapview hg19]  CDCA7 [Mapview hg38]
OMIM609937   616910   
Gene and transcription
Genbank (Entrez)AK027628 AK027642 AK075134 AK223524 AK297097
RefSeq transcript (Entrez)NM_031942 NM_145810
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CDCA7
Cluster EST : UnigeneHs.470654 [ NCBI ]
CGAP (NCI)Hs.470654
Alternative Splicing GalleryENSG00000144354
Gene ExpressionCDCA7 [ NCBI-GEO ]   CDCA7 [ EBI - ARRAY_EXPRESS ]   CDCA7 [ SEEK ]   CDCA7 [ MEM ]
Gene Expression Viewer (FireBrowse)CDCA7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83879
GTEX Portal (Tissue expression)CDCA7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BWT1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BWT1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BWT1
Splice isoforms : SwissVarQ9BWT1
PhosPhoSitePlusQ9BWT1
Domains : Interpro (EBI)CDCA7    Znf-4CXXC_R1   
Domain families : Pfam (Sanger)zf-4CXXC_R1 (PF10497)   
Domain families : Pfam (NCBI)pfam10497   
Conserved Domain (NCBI)CDCA7
DMDM Disease mutations83879
Blocks (Seattle)CDCA7
SuperfamilyQ9BWT1
Human Protein AtlasENSG00000144354
Peptide AtlasQ9BWT1
HPRD09874
IPIIPI00604551   IPI00784714   IPI00785043   IPI00785176   IPI00910644   IPI00915839   IPI00917470   
Protein Interaction databases
DIP (DOE-UCLA)Q9BWT1
IntAct (EBI)Q9BWT1
FunCoupENSG00000144354
BioGRIDCDCA7
STRING (EMBL)CDCA7
ZODIACCDCA7
Ontologies - Pathways
QuickGOQ9BWT1
Ontology : AmiGOnucleus  nucleoplasm  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  apoptotic process  regulation of cell proliferation  
Ontology : EGO-EBInucleus  nucleoplasm  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  apoptotic process  regulation of cell proliferation  
NDEx NetworkCDCA7
Atlas of Cancer Signalling NetworkCDCA7
Wikipedia pathwaysCDCA7
Orthology - Evolution
OrthoDB83879
GeneTree (enSembl)ENSG00000144354
Phylogenetic Trees/Animal Genes : TreeFamCDCA7
HOVERGENQ9BWT1
HOGENOMQ9BWT1
Homologs : HomoloGeneCDCA7
Homology/Alignments : Family Browser (UCSC)CDCA7
Gene fusions - Rearrangements
Fusion : MitelmanPCNXL2/CDCA7 [1q42.2/2q31.1]  [t(1;2)(q42;q31)]  
Fusion: TCGAPCNXL2 1q42.2 CDCA7 2q31.1 PRAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDCA7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDCA7
dbVarCDCA7
ClinVarCDCA7
1000_GenomesCDCA7 
Exome Variant ServerCDCA7
ExAC (Exome Aggregation Consortium)CDCA7 (select the gene name)
Genetic variants : HAPMAP83879
Genomic Variants (DGV)CDCA7 [DGVbeta]
DECIPHERCDCA7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCDCA7 
Mutations
ICGC Data PortalCDCA7 
TCGA Data PortalCDCA7 
Broad Tumor PortalCDCA7
OASIS PortalCDCA7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCDCA7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCDCA7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CDCA7
DgiDB (Drug Gene Interaction Database)CDCA7
DoCM (Curated mutations)CDCA7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CDCA7 (select a term)
intoGenCDCA7
Cancer3DCDCA7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609937    616910   
Orphanet1018   
MedgenCDCA7
Genetic Testing Registry CDCA7
NextProtQ9BWT1 [Medical]
TSGene83879
GENETestsCDCA7
Target ValidationCDCA7
Huge Navigator CDCA7 [HugePedia]
snp3D : Map Gene to Disease83879
BioCentury BCIQCDCA7
ClinGenCDCA7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83879
Chemical/Pharm GKB GenePA26280
Clinical trialCDCA7
Miscellaneous
canSAR (ICR)CDCA7 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCDCA7
EVEXCDCA7
GoPubMedCDCA7
iHOPCDCA7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:01:33 CEST 2017

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