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CDCA7L (cell division cycle associated 7 like)

Identity

Alias_namescell division cycle associated 7-like
Alias_symbol (synonym)RAM2
R1
JPO2
Other alias
HGNC (Hugo) CDCA7L
LocusID (NCBI) 55536
Atlas_Id 56537
Location 7p15.3  [Link to chromosome band 7p15]
Location_base_pair Starts at 21940517 and ends at 21985542 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
JAZF1 (7p15.2) / CDCA7L (7p15.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CDCA7L   30777
Cards
Entrez_Gene (NCBI)CDCA7L  55536  cell division cycle associated 7 like
AliasesJPO2; R1; RAM2
GeneCards (Weizmann)CDCA7L
Ensembl hg19 (Hinxton)ENSG00000164649 [Gene_View]  chr7:21940517-21985542 [Contig_View]  CDCA7L [Vega]
Ensembl hg38 (Hinxton)ENSG00000164649 [Gene_View]  chr7:21940517-21985542 [Contig_View]  CDCA7L [Vega]
ICGC DataPortalENSG00000164649
TCGA cBioPortalCDCA7L
AceView (NCBI)CDCA7L
Genatlas (Paris)CDCA7L
WikiGenes55536
SOURCE (Princeton)CDCA7L
Genetics Home Reference (NIH)CDCA7L
Genomic and cartography
GoldenPath hg19 (UCSC)CDCA7L  -     chr7:21940517-21985542 -  7p15.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CDCA7L  -     7p15.3   [Description]    (hg38-Dec_2013)
EnsemblCDCA7L - 7p15.3 [CytoView hg19]  CDCA7L - 7p15.3 [CytoView hg38]
Mapping of homologs : NCBICDCA7L [Mapview hg19]  CDCA7L [Mapview hg38]
OMIM609685   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001127370 NM_001127371 NM_018719
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CDCA7L
Cluster EST : UnigeneHs.745260 [ NCBI ]
CGAP (NCI)Hs.745260
Alternative Splicing GalleryENSG00000164649
Gene ExpressionCDCA7L [ NCBI-GEO ]   CDCA7L [ EBI - ARRAY_EXPRESS ]   CDCA7L [ SEEK ]   CDCA7L [ MEM ]
Gene Expression Viewer (FireBrowse)CDCA7L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55536
GTEX Portal (Tissue expression)CDCA7L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96GN5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96GN5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96GN5
Splice isoforms : SwissVarQ96GN5
PhosPhoSitePlusQ96GN5
Domains : Interpro (EBI)CDCA7L    Znf-4CXXC_R1   
Domain families : Pfam (Sanger)zf-4CXXC_R1 (PF10497)   
Domain families : Pfam (NCBI)pfam10497   
Conserved Domain (NCBI)CDCA7L
DMDM Disease mutations55536
Blocks (Seattle)CDCA7L
SuperfamilyQ96GN5
Human Protein AtlasENSG00000164649
Peptide AtlasQ96GN5
HPRD11481
IPIIPI00657791   IPI00784657   IPI00892724   IPI00974220   IPI00893468   IPI00884394   IPI00150554   IPI00895942   
Protein Interaction databases
DIP (DOE-UCLA)Q96GN5
IntAct (EBI)Q96GN5
FunCoupENSG00000164649
BioGRIDCDCA7L
STRING (EMBL)CDCA7L
ZODIACCDCA7L
Ontologies - Pathways
QuickGOQ96GN5
Ontology : AmiGOprotein binding  nucleus  nucleolus  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  positive regulation of cell proliferation  
Ontology : EGO-EBIprotein binding  nucleus  nucleolus  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  positive regulation of cell proliferation  
NDEx NetworkCDCA7L
Atlas of Cancer Signalling NetworkCDCA7L
Wikipedia pathwaysCDCA7L
Orthology - Evolution
OrthoDB55536
GeneTree (enSembl)ENSG00000164649
Phylogenetic Trees/Animal Genes : TreeFamCDCA7L
HOVERGENQ96GN5
HOGENOMQ96GN5
Homologs : HomoloGeneCDCA7L
Homology/Alignments : Family Browser (UCSC)CDCA7L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDCA7L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDCA7L
dbVarCDCA7L
ClinVarCDCA7L
1000_GenomesCDCA7L 
Exome Variant ServerCDCA7L
ExAC (Exome Aggregation Consortium)CDCA7L (select the gene name)
Genetic variants : HAPMAP55536
Genomic Variants (DGV)CDCA7L [DGVbeta]
DECIPHER (Syndromes)7:21940517-21985542  ENSG00000164649
CONAN: Copy Number AnalysisCDCA7L 
Mutations
ICGC Data PortalCDCA7L 
TCGA Data PortalCDCA7L 
Broad Tumor PortalCDCA7L
OASIS PortalCDCA7L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCDCA7L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCDCA7L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CDCA7L
DgiDB (Drug Gene Interaction Database)CDCA7L
DoCM (Curated mutations)CDCA7L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CDCA7L (select a term)
intoGenCDCA7L
Cancer3DCDCA7L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609685   
Orphanet
MedgenCDCA7L
Genetic Testing Registry CDCA7L
NextProtQ96GN5 [Medical]
TSGene55536
GENETestsCDCA7L
Huge Navigator CDCA7L [HugePedia]
snp3D : Map Gene to Disease55536
BioCentury BCIQCDCA7L
ClinGenCDCA7L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55536
Chemical/Pharm GKB GenePA142672139
Clinical trialCDCA7L
Miscellaneous
canSAR (ICR)CDCA7L (select the gene name)
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCDCA7L
EVEXCDCA7L
GoPubMedCDCA7L
iHOPCDCA7L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:59:37 CET 2017

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