Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CDCP2 (CUB domain containing protein 2)

Identity

Other alias-
HGNC (Hugo) CDCP2
LocusID (NCBI) 200008
Atlas_Id 61645
Location 1p32.3  [Link to chromosome band 1p32]
Location_base_pair Starts at 54138995 and ends at 54153006 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CDCP2   27297
Cards
Entrez_Gene (NCBI)CDCP2  200008  CUB domain containing protein 2
Aliases
GeneCards (Weizmann)CDCP2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:54138995-54153006 [Contig_View]  CDCP2 [Vega]
TCGA cBioPortalCDCP2
AceView (NCBI)CDCP2
Genatlas (Paris)CDCP2
WikiGenes200008
SOURCE (Princeton)CDCP2
Genetics Home Reference (NIH)CDCP2
Genomic and cartography
GoldenPath hg38 (UCSC)CDCP2  -     chr1:54138995-54153006 -  1p32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CDCP2  -     1p32.3   [Description]    (hg19-Feb_2009)
EnsemblCDCP2 - 1p32.3 [CytoView hg19]  CDCP2 - 1p32.3 [CytoView hg38]
Mapping of homologs : NCBICDCP2 [Mapview hg19]  CDCP2 [Mapview hg38]
OMIM612320   
Gene and transcription
Genbank (Entrez)BC141440
RefSeq transcript (Entrez)NM_201546
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CDCP2
Cluster EST : UnigeneHs.568555 [ NCBI ]
CGAP (NCI)Hs.568555
Gene ExpressionCDCP2 [ NCBI-GEO ]   CDCP2 [ EBI - ARRAY_EXPRESS ]   CDCP2 [ SEEK ]   CDCP2 [ MEM ]
Gene Expression Viewer (FireBrowse)CDCP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)200008
GTEX Portal (Tissue expression)CDCP2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VXM1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VXM1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VXM1
Splice isoforms : SwissVarQ5VXM1
PhosPhoSitePlusQ5VXM1
Domaine pattern : Prosite (Expaxy)CUB (PS01180)   
Domains : Interpro (EBI)CUB_dom   
Domain families : Pfam (Sanger)CUB (PF00431)   
Domain families : Pfam (NCBI)pfam00431   
Domain families : Smart (EMBL)CUB (SM00042)  
Conserved Domain (NCBI)CDCP2
DMDM Disease mutations200008
Blocks (Seattle)CDCP2
SuperfamilyQ5VXM1
Peptide AtlasQ5VXM1
HPRD14122
IPIIPI00480030   IPI00655538   
Protein Interaction databases
DIP (DOE-UCLA)Q5VXM1
IntAct (EBI)Q5VXM1
BioGRIDCDCP2
STRING (EMBL)CDCP2
ZODIACCDCP2
Ontologies - Pathways
QuickGOQ5VXM1
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkCDCP2
Atlas of Cancer Signalling NetworkCDCP2
Wikipedia pathwaysCDCP2
Orthology - Evolution
OrthoDB200008
Phylogenetic Trees/Animal Genes : TreeFamCDCP2
HOVERGENQ5VXM1
HOGENOMQ5VXM1
Homologs : HomoloGeneCDCP2
Homology/Alignments : Family Browser (UCSC)CDCP2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDCP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDCP2
dbVarCDCP2
ClinVarCDCP2
1000_GenomesCDCP2 
Exome Variant ServerCDCP2
ExAC (Exome Aggregation Consortium)CDCP2 (select the gene name)
Genetic variants : HAPMAP200008
Genomic Variants (DGV)CDCP2 [DGVbeta]
DECIPHERCDCP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCDCP2 
Mutations
ICGC Data PortalCDCP2 
TCGA Data PortalCDCP2 
Broad Tumor PortalCDCP2
OASIS PortalCDCP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCDCP2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCDCP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CDCP2
DgiDB (Drug Gene Interaction Database)CDCP2
DoCM (Curated mutations)CDCP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CDCP2 (select a term)
intoGenCDCP2
Cancer3DCDCP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612320   
Orphanet
MedgenCDCP2
Genetic Testing Registry CDCP2
NextProtQ5VXM1 [Medical]
TSGene200008
GENETestsCDCP2
Target ValidationCDCP2
Huge Navigator CDCP2 [HugePedia]
snp3D : Map Gene to Disease200008
BioCentury BCIQCDCP2
ClinGenCDCP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD200008
Chemical/Pharm GKB GenePA143485432
Clinical trialCDCP2
Miscellaneous
canSAR (ICR)CDCP2 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCDCP2
EVEXCDCP2
GoPubMedCDCP2
iHOPCDCP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:04:25 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.