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CDH10 (cadherin 10)

Identity

Other alias-
HGNC (Hugo) CDH10
LocusID (NCBI) 1008
Atlas_Id 56955
Location 5p14.2  [Link to chromosome band 5p14]
Location_base_pair Starts at 24487100 and ends at 24644978 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SYT1 (12q21.2) / CDH10 (5p14.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CDH10   1749
Cards
Entrez_Gene (NCBI)CDH10  1008  cadherin 10
Aliases
GeneCards (Weizmann)CDH10
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr5:24487100-24644978 [Contig_View]  CDH10 [Vega]
TCGA cBioPortalCDH10
AceView (NCBI)CDH10
Genatlas (Paris)CDH10
WikiGenes1008
SOURCE (Princeton)CDH10
Genetics Home Reference (NIH)CDH10
Genomic and cartography
GoldenPath hg38 (UCSC)CDH10  -     chr5:24487100-24644978 -  5p14.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CDH10  -     5p14.2   [Description]    (hg19-Feb_2009)
EnsemblCDH10 - 5p14.2 [CytoView hg19]  CDH10 - 5p14.2 [CytoView hg38]
Mapping of homologs : NCBICDH10 [Mapview hg19]  CDH10 [Mapview hg38]
OMIM604555   
Gene and transcription
Genbank (Entrez)AA209467 AB035303 BC144168 BC152828 BC156818
RefSeq transcript (Entrez)NM_001190450 NM_001317222 NM_001317224 NM_006727
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CDH10
Cluster EST : UnigeneHs.92489 [ NCBI ]
CGAP (NCI)Hs.92489
Gene ExpressionCDH10 [ NCBI-GEO ]   CDH10 [ EBI - ARRAY_EXPRESS ]   CDH10 [ SEEK ]   CDH10 [ MEM ]
Gene Expression Viewer (FireBrowse)CDH10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1008
GTEX Portal (Tissue expression)CDH10
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y6N8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y6N8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y6N8
Splice isoforms : SwissVarQ9Y6N8
PhosPhoSitePlusQ9Y6N8
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_CS    Cadherin_cytoplasmic-dom    Catenin_binding_dom   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_C (PF01049)   
Domain families : Pfam (NCBI)pfam00028    pfam01049   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)CDH10
DMDM Disease mutations1008
Blocks (Seattle)CDH10
SuperfamilyQ9Y6N8
Peptide AtlasQ9Y6N8
IPIIPI00295399   IPI00966771   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y6N8
IntAct (EBI)Q9Y6N8
BioGRIDCDH10
STRING (EMBL)CDH10
ZODIACCDH10
Ontologies - Pathways
QuickGOQ9Y6N8
Ontology : AmiGOcalcium ion binding  plasma membrane  homophilic cell adhesion via plasma membrane adhesion molecules  integral component of membrane  single organismal cell-cell adhesion  adherens junction organization  
Ontology : EGO-EBIcalcium ion binding  plasma membrane  homophilic cell adhesion via plasma membrane adhesion molecules  integral component of membrane  single organismal cell-cell adhesion  adherens junction organization  
NDEx NetworkCDH10
Atlas of Cancer Signalling NetworkCDH10
Wikipedia pathwaysCDH10
Orthology - Evolution
OrthoDB1008
Phylogenetic Trees/Animal Genes : TreeFamCDH10
HOVERGENQ9Y6N8
HOGENOMQ9Y6N8
Homologs : HomoloGeneCDH10
Homology/Alignments : Family Browser (UCSC)CDH10
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDH10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDH10
dbVarCDH10
ClinVarCDH10
1000_GenomesCDH10 
Exome Variant ServerCDH10
ExAC (Exome Aggregation Consortium)CDH10 (select the gene name)
Genetic variants : HAPMAP1008
Genomic Variants (DGV)CDH10 [DGVbeta]
DECIPHERCDH10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCDH10 
Mutations
ICGC Data PortalCDH10 
TCGA Data PortalCDH10 
Broad Tumor PortalCDH10
OASIS PortalCDH10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCDH10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCDH10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CDH10
DgiDB (Drug Gene Interaction Database)CDH10
DoCM (Curated mutations)CDH10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CDH10 (select a term)
intoGenCDH10
Cancer3DCDH10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604555   
Orphanet
MedgenCDH10
Genetic Testing Registry CDH10
NextProtQ9Y6N8 [Medical]
TSGene1008
GENETestsCDH10
Target ValidationCDH10
Huge Navigator CDH10 [HugePedia]
snp3D : Map Gene to Disease1008
BioCentury BCIQCDH10
ClinGenCDH10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1008
Chemical/Pharm GKB GenePA26283
Clinical trialCDH10
Miscellaneous
canSAR (ICR)CDH10 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCDH10
EVEXCDH10
GoPubMedCDH10
iHOPCDH10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:49:21 CEST 2017

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