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CDH10 (cadherin 10)

Identity

Other alias-
HGNC (Hugo) CDH10
LocusID (NCBI) 1008
Atlas_Id 56955
Location 5p14.2  [Link to chromosome band 5p14]
Location_base_pair Starts at 24487100 and ends at 24644978 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SYT1 (12q21.2) / CDH10 (5p14.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CDH10   1749
Cards
Entrez_Gene (NCBI)CDH10  1008  cadherin 10
Aliases
GeneCards (Weizmann)CDH10
Ensembl hg19 (Hinxton)ENSG00000040731 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000040731 [Gene_View]  ENSG00000040731 [Sequence]  chr5:24487100-24644978 [Contig_View]  CDH10 [Vega]
ICGC DataPortalENSG00000040731
TCGA cBioPortalCDH10
AceView (NCBI)CDH10
Genatlas (Paris)CDH10
WikiGenes1008
SOURCE (Princeton)CDH10
Genetics Home Reference (NIH)CDH10
Genomic and cartography
GoldenPath hg38 (UCSC)CDH10  -     chr5:24487100-24644978 -  5p14.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CDH10  -     5p14.2   [Description]    (hg19-Feb_2009)
EnsemblCDH10 - 5p14.2 [CytoView hg19]  CDH10 - 5p14.2 [CytoView hg38]
Mapping of homologs : NCBICDH10 [Mapview hg19]  CDH10 [Mapview hg38]
OMIM604555   
Gene and transcription
Genbank (Entrez)AA209467 AB035303 BC144168 BM126883 BM669374
RefSeq transcript (Entrez)NM_001190450 NM_001317222 NM_001317224 NM_001362460 NM_006727
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CDH10
Cluster EST : UnigeneHs.92489 [ NCBI ]
CGAP (NCI)Hs.92489
Alternative Splicing GalleryENSG00000040731
Gene ExpressionCDH10 [ NCBI-GEO ]   CDH10 [ EBI - ARRAY_EXPRESS ]   CDH10 [ SEEK ]   CDH10 [ MEM ]
Gene Expression Viewer (FireBrowse)CDH10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1008
GTEX Portal (Tissue expression)CDH10
Human Protein AtlasENSG00000040731-CDH10 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y6N8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y6N8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y6N8
Splice isoforms : SwissVarQ9Y6N8
PhosPhoSitePlusQ9Y6N8
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_CS    Cadherin_cytoplasmic-dom    Catenin_binding_dom_sf   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_C (PF01049)   
Domain families : Pfam (NCBI)pfam00028    pfam01049   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)CDH10
DMDM Disease mutations1008
Blocks (Seattle)CDH10
SuperfamilyQ9Y6N8
Human Protein Atlas [tissue]ENSG00000040731-CDH10 [tissue]
Peptide AtlasQ9Y6N8
IPIIPI00295399   IPI00966771   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y6N8
IntAct (EBI)Q9Y6N8
FunCoupENSG00000040731
BioGRIDCDH10
STRING (EMBL)CDH10
ZODIACCDH10
Ontologies - Pathways
QuickGOQ9Y6N8
Ontology : AmiGOcell morphogenesis  calcium ion binding  plasma membrane  plasma membrane  cell-cell adherens junction  cell-cell junction assembly  homophilic cell adhesion via plasma membrane adhesion molecules  cytoskeletal protein binding  cell surface  calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules  catenin complex  adherens junction organization  adherens junction organization  protein homodimerization activity  cell-cell adhesion mediated by cadherin  cadherin binding  cell-cell adhesion  cell-cell adhesion  glutamatergic synapse  GABA-ergic synapse  integral component of presynaptic active zone membrane  integral component of postsynaptic specialization membrane  
Ontology : EGO-EBIcell morphogenesis  calcium ion binding  plasma membrane  plasma membrane  cell-cell adherens junction  cell-cell junction assembly  homophilic cell adhesion via plasma membrane adhesion molecules  cytoskeletal protein binding  cell surface  calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules  catenin complex  adherens junction organization  adherens junction organization  protein homodimerization activity  cell-cell adhesion mediated by cadherin  cadherin binding  cell-cell adhesion  cell-cell adhesion  glutamatergic synapse  GABA-ergic synapse  integral component of presynaptic active zone membrane  integral component of postsynaptic specialization membrane  
NDEx NetworkCDH10
Atlas of Cancer Signalling NetworkCDH10
Wikipedia pathwaysCDH10
Orthology - Evolution
OrthoDB1008
GeneTree (enSembl)ENSG00000040731
Phylogenetic Trees/Animal Genes : TreeFamCDH10
HOGENOMQ9Y6N8
Homologs : HomoloGeneCDH10
Homology/Alignments : Family Browser (UCSC)CDH10
Gene fusions - Rearrangements
Fusion : QuiverCDH10
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDH10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDH10
dbVarCDH10
ClinVarCDH10
1000_GenomesCDH10 
Exome Variant ServerCDH10
ExAC (Exome Aggregation Consortium)ENSG00000040731
GNOMAD BrowserENSG00000040731
Varsome BrowserCDH10
Genetic variants : HAPMAP1008
Genomic Variants (DGV)CDH10 [DGVbeta]
DECIPHERCDH10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCDH10 
Mutations
ICGC Data PortalCDH10 
TCGA Data PortalCDH10 
Broad Tumor PortalCDH10
OASIS PortalCDH10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCDH10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCDH10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CDH10
DgiDB (Drug Gene Interaction Database)CDH10
DoCM (Curated mutations)CDH10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CDH10 (select a term)
intoGenCDH10
Cancer3DCDH10(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604555   
Orphanet
DisGeNETCDH10
MedgenCDH10
Genetic Testing Registry CDH10
NextProtQ9Y6N8 [Medical]
TSGene1008
GENETestsCDH10
Target ValidationCDH10
Huge Navigator CDH10 [HugePedia]
snp3D : Map Gene to Disease1008
BioCentury BCIQCDH10
ClinGenCDH10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1008
Chemical/Pharm GKB GenePA26283
Clinical trialCDH10
Miscellaneous
canSAR (ICR)CDH10 (select the gene name)
DataMed IndexCDH10
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCDH10
EVEXCDH10
GoPubMedCDH10
iHOPCDH10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jan 17 18:05:34 CET 2019

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