Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CDH16 (cadherin 16)

Identity

Alias_namescadherin 16
Other alias-
HGNC (Hugo) CDH16
LocusID (NCBI) 1014
Atlas_Id 46416
Location 16q22.1  [Link to chromosome band 16q22]
Location_base_pair Starts at 66908122 and ends at 66918984 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CDH16   1755
Cards
Entrez_Gene (NCBI)CDH16  1014  cadherin 16
Aliases
GeneCards (Weizmann)CDH16
Ensembl hg19 (Hinxton)ENSG00000166589 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166589 [Gene_View]  chr16:66908122-66918984 [Contig_View]  CDH16 [Vega]
ICGC DataPortalENSG00000166589
TCGA cBioPortalCDH16
AceView (NCBI)CDH16
Genatlas (Paris)CDH16
WikiGenes1014
SOURCE (Princeton)CDH16
Genetics Home Reference (NIH)CDH16
Genomic and cartography
GoldenPath hg38 (UCSC)CDH16  -     chr16:66908122-66918984 -  16q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CDH16  -     16q22.1   [Description]    (hg19-Feb_2009)
EnsemblCDH16 - 16q22.1 [CytoView hg19]  CDH16 - 16q22.1 [CytoView hg38]
Mapping of homologs : NCBICDH16 [Mapview hg19]  CDH16 [Mapview hg38]
OMIM603118   
Gene and transcription
Genbank (Entrez)AF016272 AI733140 AK075243 AK225544 AK225552
RefSeq transcript (Entrez)NM_001204744 NM_001204745 NM_001204746 NM_004062
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CDH16
Cluster EST : UnigeneHs.513660 [ NCBI ]
CGAP (NCI)Hs.513660
Alternative Splicing GalleryENSG00000166589
Gene ExpressionCDH16 [ NCBI-GEO ]   CDH16 [ EBI - ARRAY_EXPRESS ]   CDH16 [ SEEK ]   CDH16 [ MEM ]
Gene Expression Viewer (FireBrowse)CDH16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1014
GTEX Portal (Tissue expression)CDH16
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75309   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75309  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75309
Splice isoforms : SwissVarO75309
PhosPhoSitePlusO75309
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-16    Cadherin-like    Cadherin_CS   
Domain families : Pfam (Sanger)Cadherin (PF00028)   
Domain families : Pfam (NCBI)pfam00028   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)CDH16
DMDM Disease mutations1014
Blocks (Seattle)CDH16
SuperfamilyO75309
Human Protein AtlasENSG00000166589
Peptide AtlasO75309
HPRD11929
IPIIPI00025240   IPI00556336   IPI01008732   IPI01008929   
Protein Interaction databases
DIP (DOE-UCLA)O75309
IntAct (EBI)O75309
FunCoupENSG00000166589
BioGRIDCDH16
STRING (EMBL)CDH16
ZODIACCDH16
Ontologies - Pathways
QuickGOO75309
Ontology : AmiGOcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  cell-cell signaling  nervous system development  basolateral plasma membrane  calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules  extracellular exosome  
Ontology : EGO-EBIcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  cell-cell signaling  nervous system development  basolateral plasma membrane  calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules  extracellular exosome  
NDEx NetworkCDH16
Atlas of Cancer Signalling NetworkCDH16
Wikipedia pathwaysCDH16
Orthology - Evolution
OrthoDB1014
GeneTree (enSembl)ENSG00000166589
Phylogenetic Trees/Animal Genes : TreeFamCDH16
HOVERGENO75309
HOGENOMO75309
Homologs : HomoloGeneCDH16
Homology/Alignments : Family Browser (UCSC)CDH16
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDH16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDH16
dbVarCDH16
ClinVarCDH16
1000_GenomesCDH16 
Exome Variant ServerCDH16
ExAC (Exome Aggregation Consortium)CDH16 (select the gene name)
Genetic variants : HAPMAP1014
Genomic Variants (DGV)CDH16 [DGVbeta]
DECIPHERCDH16 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCDH16 
Mutations
ICGC Data PortalCDH16 
TCGA Data PortalCDH16 
Broad Tumor PortalCDH16
OASIS PortalCDH16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCDH16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCDH16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CDH16
DgiDB (Drug Gene Interaction Database)CDH16
DoCM (Curated mutations)CDH16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CDH16 (select a term)
intoGenCDH16
Cancer3DCDH16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603118   
Orphanet
MedgenCDH16
Genetic Testing Registry CDH16
NextProtO75309 [Medical]
TSGene1014
GENETestsCDH16
Target ValidationCDH16
Huge Navigator CDH16 [HugePedia]
snp3D : Map Gene to Disease1014
BioCentury BCIQCDH16
ClinGenCDH16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1014
Chemical/Pharm GKB GenePA26289
Clinical trialCDH16
Miscellaneous
canSAR (ICR)CDH16 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCDH16
EVEXCDH16
GoPubMedCDH16
iHOPCDH16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:49:22 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.