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CDH18-AS1 (CDH18 antisense RNA 1)

Identity

Other alias-
HGNC (Hugo) CDH18-AS1
LocusID (NCBI) 102725105
Atlas_Id 79926
Location 5p14.3  [Link to chromosome band 5p14]
Location_base_pair Starts at 20305551 and ends at 20332446 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CDH18-AS1   53088
Cards
Entrez_Gene (NCBI)CDH18-AS1  102725105  CDH18 antisense RNA 1
Aliases
GeneCards (Weizmann)CDH18-AS1
Ensembl hg19 (Hinxton)ENSG00000249854 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000249854 [Gene_View]  ENSG00000249854 [Sequence]  chr5:20305551-20332446 [Contig_View]  CDH18-AS1 [Vega]
ICGC DataPortalENSG00000249854
TCGA cBioPortalCDH18-AS1
AceView (NCBI)CDH18-AS1
Genatlas (Paris)CDH18-AS1
WikiGenes102725105
SOURCE (Princeton)CDH18-AS1
Genetics Home Reference (NIH)CDH18-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)CDH18-AS1  -     chr5:20305551-20332446 +  5p14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CDH18-AS1  -     5p14.3   [Description]    (hg19-Feb_2009)
EnsemblCDH18-AS1 - 5p14.3 [CytoView hg19]  CDH18-AS1 - 5p14.3 [CytoView hg38]
Mapping of homologs : NCBICDH18-AS1 [Mapview hg19]  CDH18-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CDH18-AS1
Alternative Splicing GalleryENSG00000249854
Gene ExpressionCDH18-AS1 [ NCBI-GEO ]   CDH18-AS1 [ EBI - ARRAY_EXPRESS ]   CDH18-AS1 [ SEEK ]   CDH18-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)CDH18-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)102725105
GTEX Portal (Tissue expression)CDH18-AS1
Human Protein AtlasENSG00000249854-CDH18-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CDH18-AS1
DMDM Disease mutations102725105
Blocks (Seattle)CDH18-AS1
Human Protein Atlas [tissue]ENSG00000249854-CDH18-AS1 [tissue]
Protein Interaction databases
FunCoupENSG00000249854
BioGRIDCDH18-AS1
STRING (EMBL)CDH18-AS1
ZODIACCDH18-AS1
Ontologies - Pathways
Huge Navigator CDH18-AS1 [HugePedia]
snp3D : Map Gene to Disease102725105
BioCentury BCIQCDH18-AS1
ClinGenCDH18-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102725105
Clinical trialCDH18-AS1
Miscellaneous
canSAR (ICR)CDH18-AS1 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineCDH18-AS1
EVEXCDH18-AS1
GoPubMedCDH18-AS1
iHOPCDH18-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:40:05 CEST 2018

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