Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CDH18 (cadherin 18)

Identity

Alias_namescadherin 18
Alias_symbol (synonym)CDH14
EY-CADHERIN
Other aliasCDH14L
CDH24
HGNC (Hugo) CDH18
LocusID (NCBI) 1016
Atlas_Id 40021
Location 5p14.3  [Link to chromosome band 5p14]
Location_base_pair Starts at 19471296 and ends at 19988244 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CDH18 (5p14.3) / PHF14 (7p21.3)FAM134B (5p15.1) / CDH18 (5p14.3)SHC1 (1q21.3) / CDH18 (5p14.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CDH18   1757
Cards
Entrez_Gene (NCBI)CDH18  1016  cadherin 18
AliasesCDH14; CDH14L; CDH24
GeneCards (Weizmann)CDH18
Ensembl hg19 (Hinxton)ENSG00000145526 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000145526 [Gene_View]  ENSG00000145526 [Sequence]  chr5:19471296-19988244 [Contig_View]  CDH18 [Vega]
ICGC DataPortalENSG00000145526
TCGA cBioPortalCDH18
AceView (NCBI)CDH18
Genatlas (Paris)CDH18
WikiGenes1016
SOURCE (Princeton)CDH18
Genetics Home Reference (NIH)CDH18
Genomic and cartography
GoldenPath hg38 (UCSC)CDH18  -     chr5:19471296-19988244 -  5p14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CDH18  -     5p14.3   [Description]    (hg19-Feb_2009)
EnsemblCDH18 - 5p14.3 [CytoView hg19]  CDH18 - 5p14.3 [CytoView hg38]
Mapping of homologs : NCBICDH18 [Mapview hg19]  CDH18 [Mapview hg38]
OMIM603019   
Gene and transcription
Genbank (Entrez)AK289547 AK295087 AK308745 BC031051 BI549773
RefSeq transcript (Entrez)NM_001167667 NM_001291956 NM_001291957 NM_001349556 NM_001349558 NM_001349559 NM_001349560 NM_001349561 NM_001349562 NM_001349563 NM_004934
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CDH18
Cluster EST : UnigeneHs.590304 [ NCBI ]
CGAP (NCI)Hs.590304
Alternative Splicing GalleryENSG00000145526
Gene ExpressionCDH18 [ NCBI-GEO ]   CDH18 [ EBI - ARRAY_EXPRESS ]   CDH18 [ SEEK ]   CDH18 [ MEM ]
Gene Expression Viewer (FireBrowse)CDH18 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1016
GTEX Portal (Tissue expression)CDH18
Human Protein AtlasENSG00000145526-CDH18 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13634   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13634  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13634
Splice isoforms : SwissVarQ13634
PhosPhoSitePlusQ13634
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_CS    Cadherin_cytoplasmic-dom    Catenin_binding_dom_sf   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_C (PF01049)   
Domain families : Pfam (NCBI)pfam00028    pfam01049   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)CDH18
DMDM Disease mutations1016
Blocks (Seattle)CDH18
SuperfamilyQ13634
Human Protein Atlas [tissue]ENSG00000145526-CDH18 [tissue]
Peptide AtlasQ13634
HPRD04314
IPIIPI00014371   IPI00967122   IPI00910672   IPI00965259   IPI00966324   
Protein Interaction databases
DIP (DOE-UCLA)Q13634
IntAct (EBI)Q13634
FunCoupENSG00000145526
BioGRIDCDH18
STRING (EMBL)CDH18
ZODIACCDH18
Ontologies - Pathways
QuickGOQ13634
Ontology : AmiGOcell morphogenesis  calcium ion binding  plasma membrane  plasma membrane  cell-cell adherens junction  cell-cell junction assembly  homophilic cell adhesion via plasma membrane adhesion molecules  cytoskeletal protein binding  cell surface  integral component of membrane  calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules  catenin complex  adherens junction organization  adherens junction organization  protein homodimerization activity  cell-cell adhesion mediated by cadherin  cadherin binding  cell-cell adhesion  
Ontology : EGO-EBIcell morphogenesis  calcium ion binding  plasma membrane  plasma membrane  cell-cell adherens junction  cell-cell junction assembly  homophilic cell adhesion via plasma membrane adhesion molecules  cytoskeletal protein binding  cell surface  integral component of membrane  calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules  catenin complex  adherens junction organization  adherens junction organization  protein homodimerization activity  cell-cell adhesion mediated by cadherin  cadherin binding  cell-cell adhesion  
NDEx NetworkCDH18
Atlas of Cancer Signalling NetworkCDH18
Wikipedia pathwaysCDH18
Orthology - Evolution
OrthoDB1016
GeneTree (enSembl)ENSG00000145526
Phylogenetic Trees/Animal Genes : TreeFamCDH18
HOGENOMQ13634
Homologs : HomoloGeneCDH18
Homology/Alignments : Family Browser (UCSC)CDH18
Gene fusions - Rearrangements
Fusion : MitelmanFAM134B/CDH18 [5p15.1/5p14.3]  [t(5;5)(p14;p15)]  
Fusion : QuiverCDH18
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDH18 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDH18
dbVarCDH18
ClinVarCDH18
1000_GenomesCDH18 
Exome Variant ServerCDH18
ExAC (Exome Aggregation Consortium)ENSG00000145526
GNOMAD BrowserENSG00000145526
Varsome BrowserCDH18
Genetic variants : HAPMAP1016
Genomic Variants (DGV)CDH18 [DGVbeta]
DECIPHERCDH18 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCDH18 
Mutations
ICGC Data PortalCDH18 
TCGA Data PortalCDH18 
Broad Tumor PortalCDH18
OASIS PortalCDH18 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCDH18  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCDH18
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CDH18
DgiDB (Drug Gene Interaction Database)CDH18
DoCM (Curated mutations)CDH18 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CDH18 (select a term)
intoGenCDH18
Cancer3DCDH18(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603019   
Orphanet
DisGeNETCDH18
MedgenCDH18
Genetic Testing Registry CDH18
NextProtQ13634 [Medical]
TSGene1016
GENETestsCDH18
Target ValidationCDH18
Huge Navigator CDH18 [HugePedia]
snp3D : Map Gene to Disease1016
BioCentury BCIQCDH18
ClinGenCDH18
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1016
Chemical/Pharm GKB GenePA26291
Clinical trialCDH18
Miscellaneous
canSAR (ICR)CDH18 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCDH18
EVEXCDH18
GoPubMedCDH18
iHOPCDH18
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Dec 21 15:10:44 CET 2018

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