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CDH20 (cadherin 20)

Identity

Other namesCDH7L3
Cdh7
HGNC (Hugo) CDH20
LocusID (NCBI) 28316
Atlas_Id 40024
Location 18q21.33
Location_base_pair Starts at 59157775 and ends at 59222365 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ATF3 (1q32.3) / CDH20 (18q21.33)ATF3 1q32.3 / CDH20 18q21.33

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CDH20   1760
Cards
Entrez_Gene (NCBI)CDH20  28316  cadherin 20
GeneCards (Weizmann)CDH20
Ensembl hg19 (Hinxton)ENSG00000101542 [Gene_View]  chr18:59157775-59222365 [Contig_View]  CDH20 [Vega]
Ensembl hg38 (Hinxton)ENSG00000101542 [Gene_View]  chr18:59157775-59222365 [Contig_View]  CDH20 [Vega]
ICGC DataPortalENSG00000101542
TCGA cBioPortalCDH20
AceView (NCBI)CDH20
Genatlas (Paris)CDH20
WikiGenes28316
SOURCE (Princeton)CDH20
Genomic and cartography
GoldenPath hg19 (UCSC)CDH20  -     chr18:59157775-59222365 +  18q21.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CDH20  -     18q21.33   [Description]    (hg38-Dec_2013)
EnsemblCDH20 - 18q21.33 [CytoView hg19]  CDH20 - 18q21.33 [CytoView hg38]
Mapping of homologs : NCBICDH20 [Mapview hg19]  CDH20 [Mapview hg38]
OMIM605807   
Gene and transcription
Genbank (Entrez)AF217289 AK094366 AK290190 AK313809 BC101047
RefSeq transcript (Entrez)NM_031891
RefSeq genomic (Entrez)NC_000018 NC_018929 NT_010966 NW_004929411
Consensus coding sequences : CCDS (NCBI)CDH20
Cluster EST : UnigeneHs.671510 [ NCBI ]
CGAP (NCI)Hs.671510
Alternative Splicing : Fast-db (Paris)GSHG0014086
Alternative Splicing GalleryENSG00000101542
Gene ExpressionCDH20 [ NCBI-GEO ]   CDH20 [ EBI - ARRAY_EXPRESS ]   CDH20 [ SEEK ]   CDH20 [ MEM ]
Gene Expression Viewer (FireBrowse)CDH20 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)28316
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HBT6 (Uniprot)
NextProtQ9HBT6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HBT6
Splice isoforms : SwissVarQ9HBT6 (Swissvar)
PhosPhoSitePlusQ9HBT6
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_CS    Cadherin_cytoplasmic-dom    Catenin_binding_dom   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_C (PF01049)   
Domain families : Pfam (NCBI)pfam00028    pfam01049   
Domain families : Smart (EMBL)CA (SM00112)  
DMDM Disease mutations28316
Blocks (Seattle)CDH20
SuperfamilyQ9HBT6
Human Protein AtlasENSG00000101542
Peptide AtlasQ9HBT6
HPRD10429
IPIIPI00307612   
Protein Interaction databases
DIP (DOE-UCLA)Q9HBT6
IntAct (EBI)Q9HBT6
FunCoupENSG00000101542
BioGRIDCDH20
STRING (EMBL)CDH20
ZODIACCDH20
Ontologies - Pathways
QuickGOQ9HBT6
Ontology : AmiGOcalcium ion binding  plasma membrane  homophilic cell adhesion via plasma membrane adhesion molecules  integral component of membrane  
Ontology : EGO-EBIcalcium ion binding  plasma membrane  homophilic cell adhesion via plasma membrane adhesion molecules  integral component of membrane  
NDEx Network
Atlas of Cancer Signalling NetworkCDH20
Wikipedia pathwaysCDH20
Orthology - Evolution
OrthoDB28316
GeneTree (enSembl)ENSG00000101542
Phylogenetic Trees/Animal Genes : TreeFamCDH20
Homologs : HomoloGeneCDH20
Homology/Alignments : Family Browser (UCSC)CDH20
Gene fusions - Rearrangements
Fusion: TCGAATF3 1q32.3 CDH20 18q21.33 LUSC
Polymorphisms : SNP, variants
NCBI Variation ViewerCDH20 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDH20
dbVarCDH20
ClinVarCDH20
1000_GenomesCDH20 
Exome Variant ServerCDH20
ExAC (Exome Aggregation Consortium)CDH20 (select the gene name)
SNP (GeneSNP Utah)CDH20
SNP : HGBaseCDH20
Genetic variants : HAPMAPCDH20
Genomic Variants (DGV)CDH20 [DGVbeta]
Mutations
ICGC Data PortalCDH20 
TCGA Data PortalCDH20 
Broad Tumor PortalCDH20
OASIS PortalCDH20 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCDH20 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CDH20
DgiDB (Drug Gene Interaction Database)CDH20
DoCM (Curated mutations)CDH20 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CDH20 (select a term)
intoGenCDH20
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)18:59157775-59222365
CONAN: Copy Number AnalysisCDH20 
Mutations and Diseases : HGMDCDH20
OMIM605807   
MedgenCDH20
Genetic Testing Registry CDH20
NextProtQ9HBT6 [Medical]
TSGene28316
GENETestsCDH20
Huge Navigator CDH20 [HugePedia]  CDH20 [HugeCancerGEM]
snp3D : Map Gene to Disease28316
BioCentury BCIQCDH20
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD28316
Chemical/Pharm GKB GenePA26294
Clinical trialCDH20
Miscellaneous
canSAR (ICR)CDH20 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCDH20
GoPubMedCDH20
iHOPCDH20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Apr 16 17:39:29 CEST 2016

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