Atlas of Genetics and Cytogenetics in Oncology and Haematology

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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret
Donations are also welcome
If each casual visitor gives 3 Euros or Dollars, the Atlas is saved in a week !
If each professional gives 100 Euros or Dollars once a year (now), the Atlas is saved in 2 weeks !
Don't let the Atlas imminent demise
Note: we send fiscal receipts for donations equal or above 50 Euros or Dollars

Donate (in Euros)

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CDH20 (cadherin 20, type 2)


Other namesCDH7L3
HGNC (Hugo) CDH20
LocusID (NCBI) 28316
Location 18q21.33
Location_base_pair Starts at 59157775 and ends at 59222365 bp from pter ( according to hg19-Feb_2009)

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

HGNC (Hugo)CDH20   1760
Entrez_Gene (NCBI)CDH20  28316  cadherin 20, type 2
GeneCards (Weizmann)CDH20
Ensembl hg19 (Hinxton)ENSG00000101542 [Gene_View]  chr18:59157775-59222365 [Contig_View]  CDH20 [Vega]
Ensembl hg38 (Hinxton)ENSG00000101542 [Gene_View]  chr18:59157775-59222365 [Contig_View]  CDH20 [Vega]
ICGC DataPortalENSG00000101542
AceView (NCBI)CDH20
Genatlas (Paris)CDH20
SOURCE (Princeton)CDH20
Genomic and cartography
GoldenPath hg19 (UCSC)CDH20  -     chr18:59157775-59222365 +  18q21.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CDH20  -     18q21.33   [Description]    (hg38-Dec_2013)
EnsemblCDH20 - 18q21.33 [CytoView hg19]  CDH20 - 18q21.33 [CytoView hg38]
Mapping of homologs : NCBICDH20 [Mapview hg19]  CDH20 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF217289 AK094366 AK290190 AK313809 BC101047
RefSeq transcript (Entrez)NM_031891
RefSeq genomic (Entrez)NC_000018 NC_018929 NT_010966 NW_004929411
Consensus coding sequences : CCDS (NCBI)CDH20
Cluster EST : UnigeneHs.671510 [ NCBI ]
CGAP (NCI)Hs.671510
Alternative Splicing : Fast-db (Paris)GSHG0014086
Alternative Splicing GalleryENSG00000101542
Gene ExpressionCDH20 [ NCBI-GEO ]     CDH20 [ SEEK ]   CDH20 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HBT6 (Uniprot)
NextProtQ9HBT6  [Medical]
With graphics : InterProQ9HBT6
Splice isoforms : SwissVarQ9HBT6 (Swissvar)
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_CS    Cadherin_cytoplasmic-dom    Catenin_binding_dom   
Related proteins : CluSTrQ9HBT6
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_C (PF01049)   
Domain families : Pfam (NCBI)pfam00028    pfam01049   
Domain families : Smart (EMBL)CA (SM00112)  
DMDM Disease mutations28316
Blocks (Seattle)Q9HBT6
Human Protein AtlasENSG00000101542
Peptide AtlasQ9HBT6
Protein Interaction databases
IntAct (EBI)Q9HBT6
Ontologies - Pathways
Ontology : AmiGOcalcium ion binding  plasma membrane  homophilic cell adhesion via plasma membrane adhesion molecules  integral component of membrane  
Ontology : EGO-EBIcalcium ion binding  plasma membrane  homophilic cell adhesion via plasma membrane adhesion molecules  integral component of membrane  
Protein Interaction DatabaseCDH20
DoCM (Curated mutations)CDH20
Wikipedia pathwaysCDH20
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerCDH20 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDH20
Exome Variant ServerCDH20
SNP (GeneSNP Utah)CDH20
Genetic variants : HAPMAPCDH20
Genomic Variants (DGV)CDH20 [DGVbeta]
ICGC Data PortalENSG00000101542 
Somatic Mutations in Cancer : COSMICCDH20 
CONAN: Copy Number AnalysisCDH20 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
DECIPHER (Syndromes)18:59157775-59222365
Mutations and Diseases : HGMDCDH20
NextProtQ9HBT6 [Medical]
Disease Genetic AssociationCDH20
Huge Navigator CDH20 [HugePedia]  CDH20 [HugeCancerGEM]
snp3D : Map Gene to Disease28316
DGIdb (Drug Gene Interaction db)CDH20
General knowledge
Homologs : HomoloGeneCDH20
Homology/Alignments : Family Browser (UCSC)CDH20
Phylogenetic Trees/Animal Genes : TreeFamCDH20
Chemical/Protein Interactions : CTD28316
Chemical/Pharm GKB GenePA26294
Clinical trialCDH20
Cancer Resource (Charite)ENSG00000101542
Other databases
PubMed6 Pubmed reference(s) in Entrez
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI


Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Mar 28 15:00:12 CET 2015

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