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CDH22 (cadherin 22)

Identity

Alias_namesC20orf25
cadherin-like 22
cadherin 22, type 2
Alias_symbol (synonym)dJ998H6.1
Other alias
HGNC (Hugo) CDH22
LocusID (NCBI) 64405
Atlas_Id 51088
Location 20q13.12  [Link to chromosome band 20q13]
Location_base_pair Starts at 46173733 and ends at 46308498 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SEZ6L (22q12.1) / CDH22 (20q13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CDH22   13251
Cards
Entrez_Gene (NCBI)CDH22  64405  cadherin 22
AliasesC20orf25; dJ998H6.1
GeneCards (Weizmann)CDH22
Ensembl hg19 (Hinxton)ENSG00000149654 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000149654 [Gene_View]  chr20:46173733-46308498 [Contig_View]  CDH22 [Vega]
ICGC DataPortalENSG00000149654
TCGA cBioPortalCDH22
AceView (NCBI)CDH22
Genatlas (Paris)CDH22
WikiGenes64405
SOURCE (Princeton)CDH22
Genetics Home Reference (NIH)CDH22
Genomic and cartography
GoldenPath hg38 (UCSC)CDH22  -     chr20:46173733-46308498 -  20q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CDH22  -     20q13.12   [Description]    (hg19-Feb_2009)
EnsemblCDH22 - 20q13.12 [CytoView hg19]  CDH22 - 20q13.12 [CytoView hg38]
Mapping of homologs : NCBICDH22 [Mapview hg19]  CDH22 [Mapview hg38]
OMIM609920   
Gene and transcription
Genbank (Entrez)AF035300 AK289584 BC031232 BC039056 BC136526
RefSeq transcript (Entrez)NM_021248
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CDH22
Cluster EST : UnigeneHs.472861 [ NCBI ]
CGAP (NCI)Hs.472861
Alternative Splicing GalleryENSG00000149654
Gene ExpressionCDH22 [ NCBI-GEO ]   CDH22 [ EBI - ARRAY_EXPRESS ]   CDH22 [ SEEK ]   CDH22 [ MEM ]
Gene Expression Viewer (FireBrowse)CDH22 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64405
GTEX Portal (Tissue expression)CDH22
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UJ99   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UJ99  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UJ99
Splice isoforms : SwissVarQ9UJ99
PhosPhoSitePlusQ9UJ99
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_CS    Cadherin_cytoplasmic-dom    Catenin_binding_dom   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_C (PF01049)   
Domain families : Pfam (NCBI)pfam00028    pfam01049   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)CDH22
DMDM Disease mutations64405
Blocks (Seattle)CDH22
SuperfamilyQ9UJ99
Human Protein AtlasENSG00000149654
Peptide AtlasQ9UJ99
HPRD13018
IPIIPI00000436   
Protein Interaction databases
DIP (DOE-UCLA)Q9UJ99
IntAct (EBI)Q9UJ99
FunCoupENSG00000149654
BioGRIDCDH22
STRING (EMBL)CDH22
ZODIACCDH22
Ontologies - Pathways
QuickGOQ9UJ99
Ontology : AmiGOcalcium ion binding  plasma membrane  homophilic cell adhesion via plasma membrane adhesion molecules  brain development  integral component of membrane  calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules  
Ontology : EGO-EBIcalcium ion binding  plasma membrane  homophilic cell adhesion via plasma membrane adhesion molecules  brain development  integral component of membrane  calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules  
NDEx NetworkCDH22
Atlas of Cancer Signalling NetworkCDH22
Wikipedia pathwaysCDH22
Orthology - Evolution
OrthoDB64405
GeneTree (enSembl)ENSG00000149654
Phylogenetic Trees/Animal Genes : TreeFamCDH22
HOVERGENQ9UJ99
HOGENOMQ9UJ99
Homologs : HomoloGeneCDH22
Homology/Alignments : Family Browser (UCSC)CDH22
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDH22 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDH22
dbVarCDH22
ClinVarCDH22
1000_GenomesCDH22 
Exome Variant ServerCDH22
ExAC (Exome Aggregation Consortium)CDH22 (select the gene name)
Genetic variants : HAPMAP64405
Genomic Variants (DGV)CDH22 [DGVbeta]
DECIPHERCDH22 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCDH22 
Mutations
ICGC Data PortalCDH22 
TCGA Data PortalCDH22 
Broad Tumor PortalCDH22
OASIS PortalCDH22 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCDH22  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCDH22
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CDH22
DgiDB (Drug Gene Interaction Database)CDH22
DoCM (Curated mutations)CDH22 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CDH22 (select a term)
intoGenCDH22
Cancer3DCDH22(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609920   
Orphanet
MedgenCDH22
Genetic Testing Registry CDH22
NextProtQ9UJ99 [Medical]
TSGene64405
GENETestsCDH22
Target ValidationCDH22
Huge Navigator CDH22 [HugePedia]
snp3D : Map Gene to Disease64405
BioCentury BCIQCDH22
ClinGenCDH22
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64405
Chemical/Pharm GKB GenePA26295
Clinical trialCDH22
Miscellaneous
canSAR (ICR)CDH22 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCDH22
EVEXCDH22
GoPubMedCDH22
iHOPCDH22
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:49:23 CEST 2017

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