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CDH23 (cadherin related 23)

Identity

Alias (NCBI)CDHR23
PITA5
USH1D
HGNC (Hugo) CDH23
HGNC Alias symbCDHR23
HGNC Alias namecadherin-related family member 23
HGNC Previous nameDFNB12
 USH1D
HGNC Previous namecadherin-like 23
LocusID (NCBI) 64072
Atlas_Id 52846
Location 10q22.1  [Link to chromosome band 10q22]
Location_base_pair Starts at 71396920 and ends at 71647462 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BTRC (10q24.32) / CDH23 (10q22.1)C10orf54 (10q22.1) / CDH23 (10q22.1)CDH23 (10q22.1) / DLG2 (11q14.1)
CDH23 (10q22.1) / FAM110D (1p36.11)CDH23 (10q22.1) / NSD1 (5q35.2)CDH23 (10q22.1) / ZNF664 (12q24.31)
CHST3 (10q22.1) / CDH23 (10q22.1)KLK5 (19q13.41) / CDH23 (10q22.1)LTBP1 (2p22.3) / CDH23 (10q22.1)
NSD1 (5q35.2) / CDH23 (10q22.1)RAB13 (1q21.3) / CDH23 (10q22.1)RAB5B (12q13.2) / CDH23 (10q22.1)
SHB (9p13.2) / CDH23 (10q22.1)BTRC 10q24.32 / CDH23 10q22.1CDH23 10q22.1 / NSD1 5q35.2
CHST3 10q22.1 / CDH23 10q22.1LTBP1 2p22.3 / CDH23 10q22.1NSD1 5q35.2 / CDH23 10q22.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CDH23   13733
Cards
Entrez_Gene (NCBI)CDH23    cadherin related 23
AliasesCDHR23; PITA5; USH1D
GeneCards (Weizmann)CDH23
Ensembl hg19 (Hinxton)ENSG00000107736 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000107736 [Gene_View]  ENSG00000107736 [Sequence]  chr10:71396920-71647462 [Contig_View]  CDH23 [Vega]
ICGC DataPortalENSG00000107736
TCGA cBioPortalCDH23
AceView (NCBI)CDH23
Genatlas (Paris)CDH23
SOURCE (Princeton)CDH23
Genetics Home Reference (NIH)CDH23
Genomic and cartography
GoldenPath hg38 (UCSC)CDH23  -     chr10:71396920-71647462 +  10q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CDH23  -     10q22.1   [Description]    (hg19-Feb_2009)
GoldenPathCDH23 - 10q22.1 [CytoView hg19]  CDH23 - 10q22.1 [CytoView hg38]
ImmunoBaseENSG00000107736
Genome Data Viewer NCBICDH23 [Mapview hg19]  
OMIM601067   601386   605516   617540   
Gene and transcription
Genbank (Entrez)AB053445 AB058715 AF312024 AK074160 AK093818
RefSeq transcript (Entrez)NM_001171930 NM_001171931 NM_001171932 NM_001171933 NM_001171934 NM_001171935 NM_001171936 NM_022124 NM_052836
Consensus coding sequences : CCDS (NCBI)CDH23
Gene ExpressionCDH23 [ NCBI-GEO ]   CDH23 [ EBI - ARRAY_EXPRESS ]   CDH23 [ SEEK ]   CDH23 [ MEM ]
Gene Expression Viewer (FireBrowse)CDH23 [ Firebrowse - Broad ]
GenevisibleExpression of CDH23 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64072
GTEX Portal (Tissue expression)CDH23
Human Protein AtlasENSG00000107736-CDH23 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CDH23
Human Protein Atlas [tissue]ENSG00000107736-CDH23 [tissue]
HPRD05699
Protein Interaction databases
BioGRIDCDH23
STRING (EMBL)CDH23
ZODIACCDH23
Ontologies - Pathways
Litterature
PubMed87 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCDH23
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:03:13 CEST 2021
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