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CDH24 (cadherin 24)

Identity

Alias_namescadherin-like 24
cadherin 24, type 2
Alias_symbol (synonym)CDH11L
Other alias
HGNC (Hugo) CDH24
LocusID (NCBI) 64403
Atlas_Id 61647
Location 14q11.2  [Link to chromosome band 14q11]
Location_base_pair Starts at 23047061 and ends at 23057538 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CDH24   14265
Cards
Entrez_Gene (NCBI)CDH24  64403  cadherin 24
AliasesCDH11L
GeneCards (Weizmann)CDH24
Ensembl hg19 (Hinxton)ENSG00000139880 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000139880 [Gene_View]  chr14:23047061-23057538 [Contig_View]  CDH24 [Vega]
ICGC DataPortalENSG00000139880
TCGA cBioPortalCDH24
AceView (NCBI)CDH24
Genatlas (Paris)CDH24
WikiGenes64403
SOURCE (Princeton)CDH24
Genetics Home Reference (NIH)CDH24
Genomic and cartography
GoldenPath hg38 (UCSC)CDH24  -     chr14:23047061-23057538 -  14q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CDH24  -     14q11.2   [Description]    (hg19-Feb_2009)
EnsemblCDH24 - 14q11.2 [CytoView hg19]  CDH24 - 14q11.2 [CytoView hg38]
Mapping of homologs : NCBICDH24 [Mapview hg19]  CDH24 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK025342 AK057922 AK289576 AK307746 AL137477
RefSeq transcript (Entrez)NM_022478 NM_144985
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CDH24
Cluster EST : UnigeneHs.155912 [ NCBI ]
CGAP (NCI)Hs.155912
Alternative Splicing GalleryENSG00000139880
Gene ExpressionCDH24 [ NCBI-GEO ]   CDH24 [ EBI - ARRAY_EXPRESS ]   CDH24 [ SEEK ]   CDH24 [ MEM ]
Gene Expression Viewer (FireBrowse)CDH24 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64403
GTEX Portal (Tissue expression)CDH24
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86UP0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86UP0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86UP0
Splice isoforms : SwissVarQ86UP0
PhosPhoSitePlusQ86UP0
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_CS    Cadherin_cytoplasmic-dom    Catenin_binding_dom   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_C (PF01049)   
Domain families : Pfam (NCBI)pfam00028    pfam01049   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)CDH24
DMDM Disease mutations64403
Blocks (Seattle)CDH24
SuperfamilyQ86UP0
Human Protein AtlasENSG00000139880
Peptide AtlasQ86UP0
HPRD13019
IPIIPI00386103   IPI00480145   IPI00009613   IPI00910115   
Protein Interaction databases
DIP (DOE-UCLA)Q86UP0
IntAct (EBI)Q86UP0
FunCoupENSG00000139880
BioGRIDCDH24
STRING (EMBL)CDH24
ZODIACCDH24
Ontologies - Pathways
QuickGOQ86UP0
Ontology : AmiGOcalcium ion binding  plasma membrane  cell-cell junction  homophilic cell adhesion via plasma membrane adhesion molecules  integral component of membrane  single organismal cell-cell adhesion  adherens junction organization  
Ontology : EGO-EBIcalcium ion binding  plasma membrane  cell-cell junction  homophilic cell adhesion via plasma membrane adhesion molecules  integral component of membrane  single organismal cell-cell adhesion  adherens junction organization  
NDEx NetworkCDH24
Atlas of Cancer Signalling NetworkCDH24
Wikipedia pathwaysCDH24
Orthology - Evolution
OrthoDB64403
GeneTree (enSembl)ENSG00000139880
Phylogenetic Trees/Animal Genes : TreeFamCDH24
HOVERGENQ86UP0
HOGENOMQ86UP0
Homologs : HomoloGeneCDH24
Homology/Alignments : Family Browser (UCSC)CDH24
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDH24 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDH24
dbVarCDH24
ClinVarCDH24
1000_GenomesCDH24 
Exome Variant ServerCDH24
ExAC (Exome Aggregation Consortium)CDH24 (select the gene name)
Genetic variants : HAPMAP64403
Genomic Variants (DGV)CDH24 [DGVbeta]
DECIPHERCDH24 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCDH24 
Mutations
ICGC Data PortalCDH24 
TCGA Data PortalCDH24 
Broad Tumor PortalCDH24
OASIS PortalCDH24 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCDH24  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCDH24
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CDH24
DgiDB (Drug Gene Interaction Database)CDH24
DoCM (Curated mutations)CDH24 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CDH24 (select a term)
intoGenCDH24
Cancer3DCDH24(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCDH24
Genetic Testing Registry CDH24
NextProtQ86UP0 [Medical]
TSGene64403
GENETestsCDH24
Target ValidationCDH24
Huge Navigator CDH24 [HugePedia]
snp3D : Map Gene to Disease64403
BioCentury BCIQCDH24
ClinGenCDH24
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64403
Chemical/Pharm GKB GenePA26297
Clinical trialCDH24
Miscellaneous
canSAR (ICR)CDH24 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCDH24
EVEXCDH24
GoPubMedCDH24
iHOPCDH24
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:42:58 CEST 2017

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