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CDH26 (cadherin 26)

Identity

Alias_namescadherin-like 26
Alias_symbol (synonym)VR20
Other alias
HGNC (Hugo) CDH26
LocusID (NCBI) 60437
Atlas_Id 61648
Location 20q13.33  [Link to chromosome band 20q13]
Location_base_pair Starts at 59996362 and ends at 60014529 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CDH26 (20q13.33) / PPM1A (14q23.1)FAT3 (11q14.3) / CDH26 (20q13.33)TMEM25 (11q23.3) / CDH26 (20q13.33)
TMEM25 CDH26FAT3 CDH26

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CDH26   15902
Cards
Entrez_Gene (NCBI)CDH26  60437  cadherin 26
AliasesVR20
GeneCards (Weizmann)CDH26
Ensembl hg19 (Hinxton)ENSG00000124215 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000124215 [Gene_View]  chr20:59996362-60014529 [Contig_View]  CDH26 [Vega]
ICGC DataPortalENSG00000124215
TCGA cBioPortalCDH26
AceView (NCBI)CDH26
Genatlas (Paris)CDH26
WikiGenes60437
SOURCE (Princeton)CDH26
Genetics Home Reference (NIH)CDH26
Genomic and cartography
GoldenPath hg38 (UCSC)CDH26  -     chr20:59996362-60014529 +  20q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CDH26  -     20q13.33   [Description]    (hg19-Feb_2009)
EnsemblCDH26 - 20q13.33 [CytoView hg19]  CDH26 - 20q13.33 [CytoView hg38]
Mapping of homologs : NCBICDH26 [Mapview hg19]  CDH26 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA454986 AF169690 AK055202 AK074477 BC062570
RefSeq transcript (Entrez)NM_001348204 NM_021810 NM_177980
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CDH26
Cluster EST : UnigeneHs.729046 [ NCBI ]
CGAP (NCI)Hs.729046
Alternative Splicing GalleryENSG00000124215
Gene ExpressionCDH26 [ NCBI-GEO ]   CDH26 [ EBI - ARRAY_EXPRESS ]   CDH26 [ SEEK ]   CDH26 [ MEM ]
Gene Expression Viewer (FireBrowse)CDH26 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)60437
GTEX Portal (Tissue expression)CDH26
Human Protein AtlasENSG00000124215-CDH26 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IXH8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IXH8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IXH8
Splice isoforms : SwissVarQ8IXH8
PhosPhoSitePlusQ8IXH8
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_CS   
Domain families : Pfam (Sanger)Cadherin (PF00028)   
Domain families : Pfam (NCBI)pfam00028   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)CDH26
DMDM Disease mutations60437
Blocks (Seattle)CDH26
SuperfamilyQ8IXH8
Human Protein Atlas [tissue]ENSG00000124215-CDH26 [tissue]
Peptide AtlasQ8IXH8
HPRD13020
IPIIPI01010666   IPI00377209   IPI00377211   IPI00788936   IPI00827914   
Protein Interaction databases
DIP (DOE-UCLA)Q8IXH8
IntAct (EBI)Q8IXH8
FunCoupENSG00000124215
BioGRIDCDH26
STRING (EMBL)CDH26
ZODIACCDH26
Ontologies - Pathways
QuickGOQ8IXH8
Ontology : AmiGOcalcium ion binding  plasma membrane  homophilic cell adhesion via plasma membrane adhesion molecules  integral component of membrane  
Ontology : EGO-EBIcalcium ion binding  plasma membrane  homophilic cell adhesion via plasma membrane adhesion molecules  integral component of membrane  
NDEx NetworkCDH26
Atlas of Cancer Signalling NetworkCDH26
Wikipedia pathwaysCDH26
Orthology - Evolution
OrthoDB60437
GeneTree (enSembl)ENSG00000124215
Phylogenetic Trees/Animal Genes : TreeFamCDH26
HOVERGENQ8IXH8
HOGENOMQ8IXH8
Homologs : HomoloGeneCDH26
Homology/Alignments : Family Browser (UCSC)CDH26
Gene fusions - Rearrangements
Fusion: TCGA_MDACCTMEM25 CDH26
Fusion: TCGA_MDACCFAT3 CDH26
Tumor Fusion PortalCDH26
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDH26 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDH26
dbVarCDH26
ClinVarCDH26
1000_GenomesCDH26 
Exome Variant ServerCDH26
ExAC (Exome Aggregation Consortium)ENSG00000124215
GNOMAD BrowserENSG00000124215
Genetic variants : HAPMAP60437
Genomic Variants (DGV)CDH26 [DGVbeta]
DECIPHERCDH26 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCDH26 
Mutations
ICGC Data PortalCDH26 
TCGE data PortalCDH26 
Broad Tumor PortalCDH26
OASIS PortalCDH26 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCDH26  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCDH26
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CDH26
DgiDB (Drug Gene Interaction Database)CDH26
DoCM (Curated mutations)CDH26 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CDH26 (select a term)
intoGenCDH26
Aancer3DCDH26(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCDH26
MedgenCDH26
Genetic Testing Registry CDH26
NextProtQ8IXH8 [Medical]
TSGene60437
GENETestsCDH26
Target ValidationCDH26
Huge Navigator CDH26 [HugePedia]
snp3D : Map Gene to Disease60437
BioCentury BCIQCDH26
ClinGenCDH26
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD60437
Chemical/Pharm GKB GenePA26298
Clinical trialCDH26
Miscellaneous
canSAR (ICR)CDH26 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCDH26
EVEXCDH26
GoPubMedCDH26
iHOPCDH26
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:41:18 CET 2017

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