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CDH26 (cadherin 26)

Identity

Alias (NCBI)VR20
HGNC (Hugo) CDH26
HGNC Alias symbVR20
HGNC Previous namecadherin-like 26
LocusID (NCBI) 60437
Atlas_Id 61648
Location 20q13.33  [Link to chromosome band 20q13]
Location_base_pair Starts at 59958423 and ends at 60014529 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CDH26 (20q13.33) / PPM1A (14q23.1)FAT3 (11q14.3) / CDH26 (20q13.33)TMEM25 (11q23.3) / CDH26 (20q13.33)
TMEM25 CDH26FAT3 CDH26

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)CDH26   15902
Cards
Entrez_Gene (NCBI)CDH26    cadherin 26
AliasesVR20
GeneCards (Weizmann)CDH26
Ensembl hg19 (Hinxton)ENSG00000124215 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000124215 [Gene_View]  ENSG00000124215 [Sequence]  chr20:59958423-60014529 [Contig_View]  CDH26 [Vega]
ICGC DataPortalENSG00000124215
TCGA cBioPortalCDH26
AceView (NCBI)CDH26
Genatlas (Paris)CDH26
SOURCE (Princeton)CDH26
Genetics Home Reference (NIH)CDH26
Genomic and cartography
GoldenPath hg38 (UCSC)CDH26  -     chr20:59958423-60014529 +  20q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CDH26  -     20q13.33   [Description]    (hg19-Feb_2009)
GoldenPathCDH26 - 20q13.33 [CytoView hg19]  CDH26 - 20q13.33 [CytoView hg38]
ImmunoBaseENSG00000124215
Genome Data Viewer NCBICDH26 [Mapview hg19]  
OMIM617685   
Gene and transcription
Genbank (Entrez)AA454986 AF169690 AK055202 AK074477 BC062570
RefSeq transcript (Entrez)NM_001348204 NM_021810 NM_177980
Consensus coding sequences : CCDS (NCBI)CDH26
Gene ExpressionCDH26 [ NCBI-GEO ]   CDH26 [ EBI - ARRAY_EXPRESS ]   CDH26 [ SEEK ]   CDH26 [ MEM ]
Gene Expression Viewer (FireBrowse)CDH26 [ Firebrowse - Broad ]
GenevisibleExpression of CDH26 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)60437
GTEX Portal (Tissue expression)CDH26
Human Protein AtlasENSG00000124215-CDH26 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IXH8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IXH8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IXH8
PhosPhoSitePlusQ8IXH8
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like_dom    Cadherin-like_sf    Cadherin_CS   
Domain families : Pfam (Sanger)Cadherin (PF00028)   
Domain families : Pfam (NCBI)pfam00028   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)CDH26
SuperfamilyQ8IXH8
AlphaFold pdb e-kbQ8IXH8   
Human Protein Atlas [tissue]ENSG00000124215-CDH26 [tissue]
HPRD13020
Protein Interaction databases
DIP (DOE-UCLA)Q8IXH8
IntAct (EBI)Q8IXH8
BioGRIDCDH26
STRING (EMBL)CDH26
ZODIACCDH26
Ontologies - Pathways
QuickGOQ8IXH8
Ontology : AmiGOintegrin binding  calcium ion binding  protein binding  plasma membrane  homophilic cell adhesion via plasma membrane adhesion molecules  beta-catenin binding  microtubule cytoskeleton  integral component of membrane  catenin complex  CD4-positive, alpha-beta T cell activation  alpha-catenin binding  cadherin binding  delta-catenin binding  cell-cell adhesion via plasma-membrane adhesion molecules  
Ontology : EGO-EBIintegrin binding  calcium ion binding  protein binding  plasma membrane  homophilic cell adhesion via plasma membrane adhesion molecules  beta-catenin binding  microtubule cytoskeleton  integral component of membrane  catenin complex  CD4-positive, alpha-beta T cell activation  alpha-catenin binding  cadherin binding  delta-catenin binding  cell-cell adhesion via plasma-membrane adhesion molecules  
NDEx NetworkCDH26
Atlas of Cancer Signalling NetworkCDH26
Wikipedia pathwaysCDH26
Orthology - Evolution
OrthoDB60437
GeneTree (enSembl)ENSG00000124215
Phylogenetic Trees/Animal Genes : TreeFamCDH26
Homologs : HomoloGeneCDH26
Homology/Alignments : Family Browser (UCSC)CDH26
Gene fusions - Rearrangements
Fusion : QuiverCDH26
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDH26 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDH26
dbVarCDH26
ClinVarCDH26
MonarchCDH26
1000_GenomesCDH26 
Exome Variant ServerCDH26
GNOMAD BrowserENSG00000124215
Varsome BrowserCDH26
ACMGCDH26 variants
VarityQ8IXH8
Genomic Variants (DGV)CDH26 [DGVbeta]
DECIPHERCDH26 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCDH26 
Mutations
ICGC Data PortalCDH26 
TCGA Data PortalCDH26 
Broad Tumor PortalCDH26
OASIS PortalCDH26 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCDH26  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCDH26
Mutations and Diseases : HGMDCDH26
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCDH26
DgiDB (Drug Gene Interaction Database)CDH26
DoCM (Curated mutations)CDH26
CIViC (Clinical Interpretations of Variants in Cancer)CDH26
Cancer3DCDH26
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617685   
Orphanet
DisGeNETCDH26
MedgenCDH26
Genetic Testing Registry CDH26
NextProtQ8IXH8 [Medical]
GENETestsCDH26
Target ValidationCDH26
Huge Navigator CDH26 [HugePedia]
ClinGenCDH26
Clinical trials, drugs, therapy
MyCancerGenomeCDH26
Protein Interactions : CTDCDH26
Pharm GKB GenePA26298
PharosQ8IXH8
Clinical trialCDH26
Miscellaneous
canSAR (ICR)CDH26
HarmonizomeCDH26
DataMed IndexCDH26
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCDH26
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:45:34 CEST 2021

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