Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CDH3 (cadherin 3, type 1, P-cadherin (placental))

Identity

Other namesCDHP
HJMD
PCAD
HGNC (Hugo) CDH3
LocusID (NCBI) 1001
Location 16q22.1
Location_base_pair Starts at 68678151 and ends at 68732957 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CDH3   1762
Entrez_Gene (NCBI)CDH3  1001  cadherin 3, type 1, P-cadherin (placental)
Cards
GeneCards (Weizmann)CDH3
Ensembl (Hinxton)ENSG00000062038 [Gene_View]  chr16:68678151-68732957 [Contig_View]  CDH3 [Vega]
AceView (NCBI)CDH3
Genatlas (Paris)CDH3
SOURCE (Stanford)NM_001793
Genomic and cartography
GoldenPath (UCSC)CDH3  -  16q22.1   chr16:68678151-68732957 +  16q22.1   [Description]    (hg19-Feb_2009)
EnsemblCDH3 - 16q22.1 [CytoView]
Mapping of homologs : NCBICDH3 [Mapview]
OMIM114021   225280   601553   
Gene and transcription
Genbank (Entrez)AI149268 AK225396 AK296968 AK312554 BC014462
RefSeq transcript (SRS)NM_001793
RefSeq transcript (Entrez)NM_001793
RefSeq genomic (SRS)AC_000148 NC_000016 NC_018927 NG_009096 NT_010498 NW_001838290 NW_004078087
RefSeq genomic (Entrez)AC_000148 NC_000016 NC_018927 NG_009096 NT_010498 NW_001838290 NW_004078087
Consensus coding sequences : CCDS (NCBI)CDH3
Cluster EST : UnigeneHs.191842 [ SRS ] Hs.191842 [ NCBI ]
CGAP (NCI)Hs.191842
Alternative Splicing : Fast-db (Paris)GSHG0011306
Alternative Splicing GalleryENSG00000062038
Gene ExpressionCDH3 [ NCBI-GEO ]   CDH3 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP22223 (SRS) P22223 (Uniprot)
NextProtP22223
With graphics : InterProP22223
Splice isoforms : SwissVarP22223(Swissvar)
Domaine pattern : Prosite (SRS)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (SRS)Cadherin    Cadherin-like    Cadherin_CS    Cadherin_cytoplasmic-dom   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_CS    Cadherin_cytoplasmic-dom   
Related proteins : CluSTrP22223
Domain families : Pfam (SRS)Cadherin (PF00028)    Cadherin_C (PF01049)   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_C (PF01049)   
Domain families : Pfam (NCBI)pfam00028    pfam01049   
Domain families : Smart (EMBL)CA (SM00112)  
DMDM1001
Blocks (Seattle)P22223
Human Protein AtlasENSG00000062038
HPRD00227
IPIIPI00747243   IPI00645614   IPI01010390   
Protein Interaction databases
DIP (DOE-UCLA)P22223
IntAct (EBI)P22223
FunCoupENSG00000062038
REACTOMECDH3
Protein Interaction Database1001
BioGRIDCDH3
InParanoidP22223
Interologous Interaction database P22223
IntegromeDBCDH3
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CDH3
SNP (GeneSNP Utah)CDH3
SNP : HGBaseCDH3
Genetic variants : HAPMAPCDH3
Somatic Mutations in Cancer : COSMICCDH3 
CONAN: Copy Number AnalysisCDH3 
Mutations and Diseases : HGMDCDH3
OMIM114021    225280    601553   
GENETests114021    225280    601553   
Disease Genetic AssociationCDH3
Huge Navigator CDH3 [HugePedia]  CDH3 [HugeCancerGEM]
Genomic VariantsCDH3  CDH3 [DGVbeta]
snp3D : Map Gene to Disease1001
General knowledge
Homologs : HomoloGeneCDH3
Homology/Alignments : Family Browser (UCSC)CDH3
Phylogenetic Trees/Animal Genes : TreeFamCDH3
Chemical/Protein Interactions : CTD1001
Chemical/Pharm GKB GenePA26299
Clinical trialCDH3
Cancer Resource (Charite)ENSG00000062038
Ontology : AmiGOcalcium ion binding  plasma membrane  plasma membrane  cell-cell adherens junction  cell adhesion  homophilic cell adhesion  visual perception  integral to membrane  cell junction assembly  adherens junction organization  cell-cell junction organization  response to stimulus  
Ontology : EGO-EBIcalcium ion binding  plasma membrane  plasma membrane  cell-cell adherens junction  cell adhesion  homophilic cell adhesion  visual perception  integral to membrane  cell junction assembly  adherens junction organization  cell-cell junction organization  response to stimulus  
Pathways : KEGGCell adhesion molecules (CAMs)
Other databases
Probes
Litterature
PubMed82 Pubmed reference(s) in Entrez
PubGeneCDH3
iHOPCDH3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:37:51 CEST 2013
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