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CDH7 (cadherin 7)

Identity

Alias_namescadherin 7
Other aliasCDH7L1
HGNC (Hugo) CDH7
LocusID (NCBI) 1005
Atlas_Id 40029
Location 18q22.1  [Link to chromosome band 18q22]
Location_base_pair Starts at 65750652 and ends at 65864125 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CDH7   1766
Cards
Entrez_Gene (NCBI)CDH7  1005  cadherin 7
AliasesCDH7L1
GeneCards (Weizmann)CDH7
Ensembl hg19 (Hinxton)ENSG00000081138 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000081138 [Gene_View]  chr18:65750652-65864125 [Contig_View]  CDH7 [Vega]
ICGC DataPortalENSG00000081138
TCGA cBioPortalCDH7
AceView (NCBI)CDH7
Genatlas (Paris)CDH7
WikiGenes1005
SOURCE (Princeton)CDH7
Genetics Home Reference (NIH)CDH7
Genomic and cartography
GoldenPath hg38 (UCSC)CDH7  -     chr18:65750652-65864125 +  18q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CDH7  -     18q22.1   [Description]    (hg19-Feb_2009)
EnsemblCDH7 - 18q22.1 [CytoView hg19]  CDH7 - 18q22.1 [CytoView hg38]
Mapping of homologs : NCBICDH7 [Mapview hg19]  CDH7 [Mapview hg38]
OMIM605806   
Gene and transcription
Genbank (Entrez)AB035301 AJ007611 BC036786 BM560514 CN309979
RefSeq transcript (Entrez)NM_001317214 NM_004361 NM_033646
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CDH7
Cluster EST : UnigeneHs.657522 [ NCBI ]
CGAP (NCI)Hs.657522
Alternative Splicing GalleryENSG00000081138
Gene ExpressionCDH7 [ NCBI-GEO ]   CDH7 [ EBI - ARRAY_EXPRESS ]   CDH7 [ SEEK ]   CDH7 [ MEM ]
Gene Expression Viewer (FireBrowse)CDH7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1005
GTEX Portal (Tissue expression)CDH7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9ULB5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9ULB5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9ULB5
Splice isoforms : SwissVarQ9ULB5
PhosPhoSitePlusQ9ULB5
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_CS    Cadherin_cytoplasmic-dom    Catenin_binding_dom   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_C (PF01049)   
Domain families : Pfam (NCBI)pfam00028    pfam01049   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)CDH7
DMDM Disease mutations1005
Blocks (Seattle)CDH7
SuperfamilyQ9ULB5
Human Protein AtlasENSG00000081138
Peptide AtlasQ9ULB5
HPRD12049
IPIIPI00297181   IPI00645684   
Protein Interaction databases
DIP (DOE-UCLA)Q9ULB5
IntAct (EBI)Q9ULB5
FunCoupENSG00000081138
BioGRIDCDH7
STRING (EMBL)CDH7
ZODIACCDH7
Ontologies - Pathways
QuickGOQ9ULB5
Ontology : AmiGOcalcium ion binding  plasma membrane  homophilic cell adhesion via plasma membrane adhesion molecules  integral component of membrane  single organismal cell-cell adhesion  adherens junction organization  
Ontology : EGO-EBIcalcium ion binding  plasma membrane  homophilic cell adhesion via plasma membrane adhesion molecules  integral component of membrane  single organismal cell-cell adhesion  adherens junction organization  
NDEx NetworkCDH7
Atlas of Cancer Signalling NetworkCDH7
Wikipedia pathwaysCDH7
Orthology - Evolution
OrthoDB1005
GeneTree (enSembl)ENSG00000081138
Phylogenetic Trees/Animal Genes : TreeFamCDH7
HOVERGENQ9ULB5
HOGENOMQ9ULB5
Homologs : HomoloGeneCDH7
Homology/Alignments : Family Browser (UCSC)CDH7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDH7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDH7
dbVarCDH7
ClinVarCDH7
1000_GenomesCDH7 
Exome Variant ServerCDH7
ExAC (Exome Aggregation Consortium)CDH7 (select the gene name)
Genetic variants : HAPMAP1005
Genomic Variants (DGV)CDH7 [DGVbeta]
DECIPHERCDH7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCDH7 
Mutations
ICGC Data PortalCDH7 
TCGA Data PortalCDH7 
Broad Tumor PortalCDH7
OASIS PortalCDH7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCDH7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCDH7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CDH7
DgiDB (Drug Gene Interaction Database)CDH7
DoCM (Curated mutations)CDH7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CDH7 (select a term)
intoGenCDH7
Cancer3DCDH7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605806   
Orphanet
MedgenCDH7
Genetic Testing Registry CDH7
NextProtQ9ULB5 [Medical]
TSGene1005
GENETestsCDH7
Target ValidationCDH7
Huge Navigator CDH7 [HugePedia]
snp3D : Map Gene to Disease1005
BioCentury BCIQCDH7
ClinGenCDH7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1005
Chemical/Pharm GKB GenePA26303
Clinical trialCDH7
Miscellaneous
canSAR (ICR)CDH7 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCDH7
EVEXCDH7
GoPubMedCDH7
iHOPCDH7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:27:42 CEST 2017

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