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CDH9 (cadherin 9, type 2 (T1-cadherin))

Identity

Alias_namescadherin 9, type 2 (T1-cadherin)
Other alias-
HGNC (Hugo) CDH9
LocusID (NCBI) 1007
Atlas_Id 61649
Location 5p14.1  [Link to chromosome band 5p14]
Location_base_pair Starts at 26880709 and ends at 27038689 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CDH9   1768
Cards
Entrez_Gene (NCBI)CDH9  1007  cadherin 9, type 2 (T1-cadherin)
Aliases
GeneCards (Weizmann)CDH9
Ensembl hg19 (Hinxton)ENSG00000113100 [Gene_View]  chr5:26880709-27038689 [Contig_View]  CDH9 [Vega]
Ensembl hg38 (Hinxton)ENSG00000113100 [Gene_View]  chr5:26880709-27038689 [Contig_View]  CDH9 [Vega]
ICGC DataPortalENSG00000113100
TCGA cBioPortalCDH9
AceView (NCBI)CDH9
Genatlas (Paris)CDH9
WikiGenes1007
SOURCE (Princeton)CDH9
Genetics Home Reference (NIH)CDH9
Genomic and cartography
GoldenPath hg19 (UCSC)CDH9  -     chr5:26880709-27038689 -  5p14.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CDH9  -     5p14.1   [Description]    (hg38-Dec_2013)
EnsemblCDH9 - 5p14.1 [CytoView hg19]  CDH9 - 5p14.1 [CytoView hg38]
Mapping of homologs : NCBICDH9 [Mapview hg19]  CDH9 [Mapview hg38]
OMIM609974   
Gene and transcription
Genbank (Entrez)AB035302 AK294183 AK307779 AK308697 BC107594
RefSeq transcript (Entrez)NM_016279
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_006576 NW_004929321
Consensus coding sequences : CCDS (NCBI)CDH9
Cluster EST : UnigeneHs.272212 [ NCBI ]
CGAP (NCI)Hs.272212
Alternative Splicing GalleryENSG00000113100
Gene ExpressionCDH9 [ NCBI-GEO ]   CDH9 [ EBI - ARRAY_EXPRESS ]   CDH9 [ SEEK ]   CDH9 [ MEM ]
Gene Expression Viewer (FireBrowse)CDH9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1007
GTEX Portal (Tissue expression)CDH9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9ULB4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9ULB4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9ULB4
Splice isoforms : SwissVarQ9ULB4
PhosPhoSitePlusQ9ULB4
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_CS    Cadherin_cytoplasmic-dom    Catenin_binding_dom   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_C (PF01049)   
Domain families : Pfam (NCBI)pfam00028    pfam01049   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)CDH9
DMDM Disease mutations1007
Blocks (Seattle)CDH9
SuperfamilyQ9ULB4
Human Protein AtlasENSG00000113100
Peptide AtlasQ9ULB4
HPRD13021
IPIIPI00297180   IPI00965224   IPI00963839   
Protein Interaction databases
DIP (DOE-UCLA)Q9ULB4
IntAct (EBI)Q9ULB4
FunCoupENSG00000113100
BioGRIDCDH9
STRING (EMBL)CDH9
ZODIACCDH9
Ontologies - Pathways
QuickGOQ9ULB4
Ontology : AmiGOmolecular_function  calcium ion binding  plasma membrane  homophilic cell adhesion via plasma membrane adhesion molecules  integral component of membrane  single organismal cell-cell adhesion  cell junction assembly  adherens junction organization  cell-cell junction organization  
Ontology : EGO-EBImolecular_function  calcium ion binding  plasma membrane  homophilic cell adhesion via plasma membrane adhesion molecules  integral component of membrane  single organismal cell-cell adhesion  cell junction assembly  adherens junction organization  cell-cell junction organization  
NDEx NetworkCDH9
Atlas of Cancer Signalling NetworkCDH9
Wikipedia pathwaysCDH9
Orthology - Evolution
OrthoDB1007
GeneTree (enSembl)ENSG00000113100
Phylogenetic Trees/Animal Genes : TreeFamCDH9
HOVERGENQ9ULB4
HOGENOMQ9ULB4
Homologs : HomoloGeneCDH9
Homology/Alignments : Family Browser (UCSC)CDH9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDH9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDH9
dbVarCDH9
ClinVarCDH9
1000_GenomesCDH9 
Exome Variant ServerCDH9
ExAC (Exome Aggregation Consortium)CDH9 (select the gene name)
Genetic variants : HAPMAP1007
Genomic Variants (DGV)CDH9 [DGVbeta]
DECIPHER (Syndromes)5:26880709-27038689  ENSG00000113100
CONAN: Copy Number AnalysisCDH9 
Mutations
ICGC Data PortalCDH9 
TCGA Data PortalCDH9 
Broad Tumor PortalCDH9
OASIS PortalCDH9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCDH9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCDH9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CDH9
DgiDB (Drug Gene Interaction Database)CDH9
DoCM (Curated mutations)CDH9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CDH9 (select a term)
intoGenCDH9
Cancer3DCDH9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609974   
Orphanet
MedgenCDH9
Genetic Testing Registry CDH9
NextProtQ9ULB4 [Medical]
TSGene1007
GENETestsCDH9
Huge Navigator CDH9 [HugePedia]
snp3D : Map Gene to Disease1007
BioCentury BCIQCDH9
ClinGenCDH9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1007
Chemical/Pharm GKB GenePA26305
Clinical trialCDH9
Miscellaneous
canSAR (ICR)CDH9 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCDH9
EVEXCDH9
GoPubMedCDH9
iHOPCDH9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:58:54 CET 2017

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