Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CDHR1 (cadherin related family member 1)

Identity

Alias (NCBI)CORD15
PCDH21
PRCAD
RP65
HGNC (Hugo) CDHR1
HGNC Alias symbKIAA1775
CORD15
RP65
HGNC Previous namePCDH21
HGNC Previous nameprotocadherin 21
 cadherin-related family member 1
LocusID (NCBI) 92211
Atlas_Id 61650
Location 10q23.1  [Link to chromosome band 10q23]
Location_base_pair Starts at 84194537 and ends at 84218694 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CDHR1 (10q23.1) / SLC34A2 (4p15.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)CDHR1   14550
Cards
Entrez_Gene (NCBI)CDHR1    cadherin related family member 1
AliasesCORD15; PCDH21; PRCAD; RP65
GeneCards (Weizmann)CDHR1
Ensembl hg19 (Hinxton)ENSG00000148600 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000148600 [Gene_View]  ENSG00000148600 [Sequence]  chr10:84194537-84218694 [Contig_View]  CDHR1 [Vega]
ICGC DataPortalENSG00000148600
TCGA cBioPortalCDHR1
AceView (NCBI)CDHR1
Genatlas (Paris)CDHR1
SOURCE (Princeton)CDHR1
Genetics Home Reference (NIH)CDHR1
Genomic and cartography
GoldenPath hg38 (UCSC)CDHR1  -     chr10:84194537-84218694 +  10q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CDHR1  -     10q23.1   [Description]    (hg19-Feb_2009)
GoldenPathCDHR1 - 10q23.1 [CytoView hg19]  CDHR1 - 10q23.1 [CytoView hg38]
ImmunoBaseENSG00000148600
Genome Data Viewer NCBICDHR1 [Mapview hg19]  
OMIM609502   613660   
Gene and transcription
Genbank (Entrez)AA576346 AB053448 AB593154 AB593155 AK124752
RefSeq transcript (Entrez)NM_001171971 NM_033100
Consensus coding sequences : CCDS (NCBI)CDHR1
Gene ExpressionCDHR1 [ NCBI-GEO ]   CDHR1 [ EBI - ARRAY_EXPRESS ]   CDHR1 [ SEEK ]   CDHR1 [ MEM ]
Gene Expression Viewer (FireBrowse)CDHR1 [ Firebrowse - Broad ]
GenevisibleExpression of CDHR1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)92211
GTEX Portal (Tissue expression)CDHR1
Human Protein AtlasENSG00000148600-CDHR1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96JP9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96JP9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96JP9
PhosPhoSitePlusQ96JP9
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin-like_dom    Cadherin-like_sf    Cadherin_CS   
Domain families : Pfam (Sanger)Cadherin (PF00028)   
Domain families : Pfam (NCBI)pfam00028   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)CDHR1
SuperfamilyQ96JP9
AlphaFold pdb e-kbQ96JP9   
Human Protein Atlas [tissue]ENSG00000148600-CDHR1 [tissue]
HPRD15106
Protein Interaction databases
DIP (DOE-UCLA)Q96JP9
IntAct (EBI)Q96JP9
BioGRIDCDHR1
STRING (EMBL)CDHR1
ZODIACCDHR1
Ontologies - Pathways
QuickGOQ96JP9
Ontology : AmiGOmolecular_function  calcium ion binding  cellular_component  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  photoreceptor cell morphogenesis  photoreceptor cell outer segment organization  photoreceptor outer segment membrane  photoreceptor cell maintenance  
Ontology : EGO-EBImolecular_function  calcium ion binding  cellular_component  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  photoreceptor cell morphogenesis  photoreceptor cell outer segment organization  photoreceptor outer segment membrane  photoreceptor cell maintenance  
NDEx NetworkCDHR1
Atlas of Cancer Signalling NetworkCDHR1
Wikipedia pathwaysCDHR1
Orthology - Evolution
OrthoDB92211
GeneTree (enSembl)ENSG00000148600
Phylogenetic Trees/Animal Genes : TreeFamCDHR1
Homologs : HomoloGeneCDHR1
Homology/Alignments : Family Browser (UCSC)CDHR1
Gene fusions - Rearrangements
Fusion : QuiverCDHR1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDHR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDHR1
dbVarCDHR1
ClinVarCDHR1
MonarchCDHR1
1000_GenomesCDHR1 
Exome Variant ServerCDHR1
GNOMAD BrowserENSG00000148600
Varsome BrowserCDHR1
ACMGCDHR1 variants
VarityQ96JP9
Genomic Variants (DGV)CDHR1 [DGVbeta]
DECIPHERCDHR1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCDHR1 
Mutations
ICGC Data PortalCDHR1 
TCGA Data PortalCDHR1 
Broad Tumor PortalCDHR1
OASIS PortalCDHR1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCDHR1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCDHR1
Mutations and Diseases : HGMDCDHR1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCDHR1
DgiDB (Drug Gene Interaction Database)CDHR1
DoCM (Curated mutations)CDHR1
CIViC (Clinical Interpretations of Variants in Cancer)CDHR1
Cancer3DCDHR1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609502    613660   
Orphanet659    1843   
DisGeNETCDHR1
MedgenCDHR1
Genetic Testing Registry CDHR1
NextProtQ96JP9 [Medical]
GENETestsCDHR1
Target ValidationCDHR1
Huge Navigator CDHR1 [HugePedia]
ClinGenCDHR1
Clinical trials, drugs, therapy
MyCancerGenomeCDHR1
Protein Interactions : CTDCDHR1
Pharm GKB GenePA33005
PharosQ96JP9
Clinical trialCDHR1
Miscellaneous
canSAR (ICR)CDHR1
HarmonizomeCDHR1
DataMed IndexCDHR1
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCDHR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:45:34 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.