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CDHR1 (cadherin related family member 1)

Identity

Alias_namesPCDH21
protocadherin 21
cadherin-related family member 1
Alias_symbol (synonym)KIAA1775
CORD15
RP65
Other aliasPRCAD
HGNC (Hugo) CDHR1
LocusID (NCBI) 92211
Atlas_Id 61650
Location 10q23.1  [Link to chromosome band 10q23]
Location_base_pair Starts at 84194635 and ends at 84219620 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CDHR1 (10q23.1) / SLC34A2 (4p15.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CDHR1   14550
Cards
Entrez_Gene (NCBI)CDHR1  92211  cadherin related family member 1
AliasesCORD15; PCDH21; PRCAD; RP65
GeneCards (Weizmann)CDHR1
Ensembl hg19 (Hinxton)ENSG00000148600 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000148600 [Gene_View]  chr10:84194635-84219620 [Contig_View]  CDHR1 [Vega]
ICGC DataPortalENSG00000148600
TCGA cBioPortalCDHR1
AceView (NCBI)CDHR1
Genatlas (Paris)CDHR1
WikiGenes92211
SOURCE (Princeton)CDHR1
Genetics Home Reference (NIH)CDHR1
Genomic and cartography
GoldenPath hg38 (UCSC)CDHR1  -     chr10:84194635-84219620 +  10q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CDHR1  -     10q23.1   [Description]    (hg19-Feb_2009)
EnsemblCDHR1 - 10q23.1 [CytoView hg19]  CDHR1 - 10q23.1 [CytoView hg38]
Mapping of homologs : NCBICDHR1 [Mapview hg19]  CDHR1 [Mapview hg38]
OMIM609502   613660   
Gene and transcription
Genbank (Entrez)AA576346 AB053448 AB593154 AB593155 AK124752
RefSeq transcript (Entrez)NM_001171971 NM_033100
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CDHR1
Cluster EST : UnigeneHs.660813 [ NCBI ]
CGAP (NCI)Hs.660813
Alternative Splicing GalleryENSG00000148600
Gene ExpressionCDHR1 [ NCBI-GEO ]   CDHR1 [ EBI - ARRAY_EXPRESS ]   CDHR1 [ SEEK ]   CDHR1 [ MEM ]
Gene Expression Viewer (FireBrowse)CDHR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)92211
GTEX Portal (Tissue expression)CDHR1
Human Protein AtlasENSG00000148600-CDHR1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96JP9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96JP9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96JP9
Splice isoforms : SwissVarQ96JP9
PhosPhoSitePlusQ96JP9
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_CS   
Domain families : Pfam (Sanger)Cadherin (PF00028)   
Domain families : Pfam (NCBI)pfam00028   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)CDHR1
DMDM Disease mutations92211
Blocks (Seattle)CDHR1
SuperfamilyQ96JP9
Human Protein Atlas [tissue]ENSG00000148600-CDHR1 [tissue]
Peptide AtlasQ96JP9
HPRD15106
IPIIPI00040730   IPI00903047   IPI00217692   
Protein Interaction databases
DIP (DOE-UCLA)Q96JP9
IntAct (EBI)Q96JP9
FunCoupENSG00000148600
BioGRIDCDHR1
STRING (EMBL)CDHR1
ZODIACCDHR1
Ontologies - Pathways
QuickGOQ96JP9
Ontology : AmiGOcalcium ion binding  integral component of plasma membrane  homophilic cell adhesion via plasma membrane adhesion molecules  cellular process  photoreceptor outer segment membrane  photoreceptor cell maintenance  
Ontology : EGO-EBIcalcium ion binding  integral component of plasma membrane  homophilic cell adhesion via plasma membrane adhesion molecules  cellular process  photoreceptor outer segment membrane  photoreceptor cell maintenance  
NDEx NetworkCDHR1
Atlas of Cancer Signalling NetworkCDHR1
Wikipedia pathwaysCDHR1
Orthology - Evolution
OrthoDB92211
GeneTree (enSembl)ENSG00000148600
Phylogenetic Trees/Animal Genes : TreeFamCDHR1
HOVERGENQ96JP9
HOGENOMQ96JP9
Homologs : HomoloGeneCDHR1
Homology/Alignments : Family Browser (UCSC)CDHR1
Gene fusions - Rearrangements
Fusion: Tumor Portal CDHR1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDHR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDHR1
dbVarCDHR1
ClinVarCDHR1
1000_GenomesCDHR1 
Exome Variant ServerCDHR1
ExAC (Exome Aggregation Consortium)ENSG00000148600
GNOMAD BrowserENSG00000148600
Genetic variants : HAPMAP92211
Genomic Variants (DGV)CDHR1 [DGVbeta]
DECIPHERCDHR1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCDHR1 
Mutations
ICGC Data PortalCDHR1 
TCGA Data PortalCDHR1 
Broad Tumor PortalCDHR1
OASIS PortalCDHR1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCDHR1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCDHR1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Eye diseases - LOVD
BioMutasearch CDHR1
DgiDB (Drug Gene Interaction Database)CDHR1
DoCM (Curated mutations)CDHR1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CDHR1 (select a term)
intoGenCDHR1
Cancer3DCDHR1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609502    613660   
Orphanet659    1843   
MedgenCDHR1
Genetic Testing Registry CDHR1
NextProtQ96JP9 [Medical]
TSGene92211
GENETestsCDHR1
Target ValidationCDHR1
Huge Navigator CDHR1 [HugePedia]
snp3D : Map Gene to Disease92211
BioCentury BCIQCDHR1
ClinGenCDHR1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD92211
Chemical/Pharm GKB GenePA33005
Clinical trialCDHR1
Miscellaneous
canSAR (ICR)CDHR1 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCDHR1
EVEXCDHR1
GoPubMedCDHR1
iHOPCDHR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:42:05 CET 2017

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