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CDHR3 (cadherin related family member 3)

Identity

Alias_namescadherin-related family member 3
Alias_symbol (synonym)FLJ44366
FLJ23834
CDH28
Other alias
HGNC (Hugo) CDHR3
LocusID (NCBI) 222256
Atlas_Id 61651
Location 7q22.3  [Link to chromosome band 7q22]
Location_base_pair Starts at 105963211 and ends at 106036431 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CAST (5q15) / CDHR3 (7q22.3)CDHR3 (7q22.3) / DMP1 (4q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CDHR3   26308
Cards
Entrez_Gene (NCBI)CDHR3  222256  cadherin related family member 3
AliasesCDH28
GeneCards (Weizmann)CDHR3
Ensembl hg19 (Hinxton)ENSG00000128536 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000128536 [Gene_View]  chr7:105963211-106036431 [Contig_View]  CDHR3 [Vega]
ICGC DataPortalENSG00000128536
TCGA cBioPortalCDHR3
AceView (NCBI)CDHR3
Genatlas (Paris)CDHR3
WikiGenes222256
SOURCE (Princeton)CDHR3
Genetics Home Reference (NIH)CDHR3
Genomic and cartography
GoldenPath hg38 (UCSC)CDHR3  -     chr7:105963211-106036431 +  7q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CDHR3  -     7q22.3   [Description]    (hg19-Feb_2009)
EnsemblCDHR3 - 7q22.3 [CytoView hg19]  CDHR3 - 7q22.3 [CytoView hg38]
Mapping of homologs : NCBICDHR3 [Mapview hg19]  CDHR3 [Mapview hg38]
OMIM615610   
Gene and transcription
Genbank (Entrez)AK074414 AK125261 AK126338 AK131293 AK304118
RefSeq transcript (Entrez)NM_001301161 NM_152750
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CDHR3
Cluster EST : UnigeneHs.150120 [ NCBI ]
CGAP (NCI)Hs.150120
Alternative Splicing GalleryENSG00000128536
Gene ExpressionCDHR3 [ NCBI-GEO ]   CDHR3 [ EBI - ARRAY_EXPRESS ]   CDHR3 [ SEEK ]   CDHR3 [ MEM ]
Gene Expression Viewer (FireBrowse)CDHR3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)222256
GTEX Portal (Tissue expression)CDHR3
Human Protein AtlasENSG00000128536-CDHR3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZTQ4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZTQ4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZTQ4
Splice isoforms : SwissVarQ6ZTQ4
PhosPhoSitePlusQ6ZTQ4
Domaine pattern : Prosite (Expaxy)CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like   
Domain families : Pfam (Sanger)Cadherin (PF00028)   
Domain families : Pfam (NCBI)pfam00028   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)CDHR3
DMDM Disease mutations222256
Blocks (Seattle)CDHR3
SuperfamilyQ6ZTQ4
Human Protein Atlas [tissue]ENSG00000128536-CDHR3 [tissue]
Peptide AtlasQ6ZTQ4
HPRD08042
IPIIPI00411702   IPI00291088   IPI01014190   IPI00945740   IPI00922158   IPI00947409   IPI00945098   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZTQ4
IntAct (EBI)Q6ZTQ4
FunCoupENSG00000128536
BioGRIDCDHR3
STRING (EMBL)CDHR3
ZODIACCDHR3
Ontologies - Pathways
QuickGOQ6ZTQ4
Ontology : AmiGOvirus receptor activity  calcium ion binding  plasma membrane  homophilic cell adhesion via plasma membrane adhesion molecules  integral component of membrane  viral entry into host cell  
Ontology : EGO-EBIvirus receptor activity  calcium ion binding  plasma membrane  homophilic cell adhesion via plasma membrane adhesion molecules  integral component of membrane  viral entry into host cell  
NDEx NetworkCDHR3
Atlas of Cancer Signalling NetworkCDHR3
Wikipedia pathwaysCDHR3
Orthology - Evolution
OrthoDB222256
GeneTree (enSembl)ENSG00000128536
Phylogenetic Trees/Animal Genes : TreeFamCDHR3
HOVERGENQ6ZTQ4
HOGENOMQ6ZTQ4
Homologs : HomoloGeneCDHR3
Homology/Alignments : Family Browser (UCSC)CDHR3
Gene fusions - Rearrangements
Fusion: Tumor Portal CDHR3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDHR3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDHR3
dbVarCDHR3
ClinVarCDHR3
1000_GenomesCDHR3 
Exome Variant ServerCDHR3
ExAC (Exome Aggregation Consortium)ENSG00000128536
GNOMAD BrowserENSG00000128536
Genetic variants : HAPMAP222256
Genomic Variants (DGV)CDHR3 [DGVbeta]
DECIPHERCDHR3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCDHR3 
Mutations
ICGC Data PortalCDHR3 
TCGA Data PortalCDHR3 
Broad Tumor PortalCDHR3
OASIS PortalCDHR3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCDHR3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCDHR3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CDHR3
DgiDB (Drug Gene Interaction Database)CDHR3
DoCM (Curated mutations)CDHR3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CDHR3 (select a term)
intoGenCDHR3
Cancer3DCDHR3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615610   
Orphanet
MedgenCDHR3
Genetic Testing Registry CDHR3
NextProtQ6ZTQ4 [Medical]
TSGene222256
GENETestsCDHR3
Target ValidationCDHR3
Huge Navigator CDHR3 [HugePedia]
snp3D : Map Gene to Disease222256
BioCentury BCIQCDHR3
ClinGenCDHR3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD222256
Chemical/Pharm GKB GenePA165617747
Clinical trialCDHR3
Miscellaneous
canSAR (ICR)CDHR3 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCDHR3
EVEXCDHR3
GoPubMedCDHR3
iHOPCDHR3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:42:05 CET 2017

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