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CDHR4 (cadherin related family member 4)

Identity

Alias_namesCDH29
cadherin-like 29
cadherin-related family member 4
Alias_symbol (synonym)VLLR9392
Other aliasPRO34300
HGNC (Hugo) CDHR4
LocusID (NCBI) 389118
Atlas_Id 61652
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 49790734 and ends at 49799835 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CDHR4   34527
Cards
Entrez_Gene (NCBI)CDHR4  389118  cadherin related family member 4
AliasesCDH29; PRO34300
GeneCards (Weizmann)CDHR4
Ensembl hg19 (Hinxton)ENSG00000187492 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187492 [Gene_View]  chr3:49790734-49799835 [Contig_View]  CDHR4 [Vega]
ICGC DataPortalENSG00000187492
TCGA cBioPortalCDHR4
AceView (NCBI)CDHR4
Genatlas (Paris)CDHR4
WikiGenes389118
SOURCE (Princeton)CDHR4
Genetics Home Reference (NIH)CDHR4
Genomic and cartography
GoldenPath hg38 (UCSC)CDHR4  -     chr3:49790734-49799835 -  3p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CDHR4  -     3p21.31   [Description]    (hg19-Feb_2009)
EnsemblCDHR4 - 3p21.31 [CytoView hg19]  CDHR4 - 3p21.31 [CytoView hg38]
Mapping of homologs : NCBICDHR4 [Mapview hg19]  CDHR4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY358221 BC132756 BC144445 BC146674 DR008129
RefSeq transcript (Entrez)NM_001007540
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CDHR4
Cluster EST : UnigeneHs.363312 [ NCBI ]
CGAP (NCI)Hs.363312
Alternative Splicing GalleryENSG00000187492
Gene ExpressionCDHR4 [ NCBI-GEO ]   CDHR4 [ EBI - ARRAY_EXPRESS ]   CDHR4 [ SEEK ]   CDHR4 [ MEM ]
Gene Expression Viewer (FireBrowse)CDHR4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)389118
GTEX Portal (Tissue expression)CDHR4
Human Protein AtlasENSG00000187492-CDHR4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6H8M9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6H8M9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6H8M9
Splice isoforms : SwissVarA6H8M9
PhosPhoSitePlusA6H8M9
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_CS   
Domain families : Pfam (Sanger)Cadherin (PF00028)   
Domain families : Pfam (NCBI)pfam00028   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)CDHR4
DMDM Disease mutations389118
Blocks (Seattle)CDHR4
SuperfamilyA6H8M9
Human Protein Atlas [tissue]ENSG00000187492-CDHR4 [tissue]
Peptide AtlasA6H8M9
HPRD17378
IPIIPI00397966   IPI00397967   IPI00922818   IPI00945449   IPI00946986   
Protein Interaction databases
DIP (DOE-UCLA)A6H8M9
IntAct (EBI)A6H8M9
FunCoupENSG00000187492
BioGRIDCDHR4
STRING (EMBL)CDHR4
ZODIACCDHR4
Ontologies - Pathways
QuickGOA6H8M9
Ontology : AmiGOcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  cell-cell signaling  nervous system development  
Ontology : EGO-EBIcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  cell-cell signaling  nervous system development  
NDEx NetworkCDHR4
Atlas of Cancer Signalling NetworkCDHR4
Wikipedia pathwaysCDHR4
Orthology - Evolution
OrthoDB389118
GeneTree (enSembl)ENSG00000187492
Phylogenetic Trees/Animal Genes : TreeFamCDHR4
HOVERGENA6H8M9
HOGENOMA6H8M9
Homologs : HomoloGeneCDHR4
Homology/Alignments : Family Browser (UCSC)CDHR4
Gene fusions - Rearrangements
Tumor Fusion PortalCDHR4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDHR4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDHR4
dbVarCDHR4
ClinVarCDHR4
1000_GenomesCDHR4 
Exome Variant ServerCDHR4
ExAC (Exome Aggregation Consortium)ENSG00000187492
GNOMAD BrowserENSG00000187492
Genetic variants : HAPMAP389118
Genomic Variants (DGV)CDHR4 [DGVbeta]
DECIPHERCDHR4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCDHR4 
Mutations
ICGC Data PortalCDHR4 
TCGA Data PortalCDHR4 
Broad Tumor PortalCDHR4
OASIS PortalCDHR4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCDHR4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCDHR4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CDHR4
DgiDB (Drug Gene Interaction Database)CDHR4
DoCM (Curated mutations)CDHR4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CDHR4 (select a term)
intoGenCDHR4
Cancer3DCDHR4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCDHR4
MedgenCDHR4
Genetic Testing Registry CDHR4
NextProtA6H8M9 [Medical]
TSGene389118
GENETestsCDHR4
Target ValidationCDHR4
Huge Navigator CDHR4 [HugePedia]
snp3D : Map Gene to Disease389118
BioCentury BCIQCDHR4
ClinGenCDHR4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD389118
Chemical/Pharm GKB GenePA165696944
Clinical trialCDHR4
Miscellaneous
canSAR (ICR)CDHR4 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCDHR4
EVEXCDHR4
GoPubMedCDHR4
iHOPCDHR4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:07:11 CET 2017

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