Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CDHR5 (cadherin related family member 5)

Identity

Alias_namesMUCDHL
MUPCDH
mucin and cadherin-like
mucin-like protocadherin
cadherin-related family member 5
Alias_symbol (synonym)FLJ20219
MU-PCDH
Other aliasMLPCDH
HGNC (Hugo) CDHR5
LocusID (NCBI) 53841
Atlas_Id 52395
Location 11p15.5  [Link to chromosome band 11p15]
Location_base_pair Starts at 616565 and ends at 625067 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CDHR5 (11p15.5) / HGS (17q25.3)CDHR5 (11p15.5) / SART3 (12q23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CDHR5   7521
Cards
Entrez_Gene (NCBI)CDHR5  53841  cadherin related family member 5
AliasesMLPCDH; MU-PCDH; MUCDHL; MUPCDH
GeneCards (Weizmann)CDHR5
Ensembl hg19 (Hinxton)ENSG00000099834 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000099834 [Gene_View]  ENSG00000099834 [Sequence]  chr11:616565-625067 [Contig_View]  CDHR5 [Vega]
ICGC DataPortalENSG00000099834
TCGA cBioPortalCDHR5
AceView (NCBI)CDHR5
Genatlas (Paris)CDHR5
WikiGenes53841
SOURCE (Princeton)CDHR5
Genetics Home Reference (NIH)CDHR5
Genomic and cartography
GoldenPath hg38 (UCSC)CDHR5  -     chr11:616565-625067 -  11p15.5   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CDHR5  -     11p15.5   [Description]    (hg19-Feb_2009)
CDHR5 - 11p15.5 [CytoView hg19]  CDHR5 - 11p15.5 [CytoView hg38]
Mapping of homologs : NCBICDHR5 [Mapview hg19]  CDHR5 [Mapview hg38]
OMIM606839   
Gene and transcription
Genbank (Entrez)AA975851 AF258675 AF258676 AF258677 AF258678
RefSeq transcript (Entrez)NM_001171968 NM_017717 NM_021924 NM_031264 NM_031265
RefSeq genomic (Entrez)NC_000011 NT_187586
Consensus coding sequences : CCDS (NCBI)CDHR5
Cluster EST : UnigeneHs.165619 [ NCBI ]
CGAP (NCI)Hs.165619
Alternative Splicing GalleryENSG00000099834
Gene ExpressionCDHR5 [ NCBI-GEO ]   CDHR5 [ EBI - ARRAY_EXPRESS ]   CDHR5 [ SEEK ]   CDHR5 [ MEM ]
Gene Expression Viewer (FireBrowse)CDHR5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)53841
GTEX Portal (Tissue expression)CDHR5
Human Protein AtlasENSG00000099834-CDHR5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HBB8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HBB8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HBB8
Splice isoforms : SwissVarQ9HBB8
PhosPhoSitePlusQ9HBB8
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_CS    Mucdhl   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)CDHR5
DMDM Disease mutations53841
Blocks (Seattle)CDHR5
SuperfamilyQ9HBB8
Human Protein Atlas [tissue]ENSG00000099834-CDHR5 [tissue]
Peptide AtlasQ9HBB8
HPRD06021
IPIIPI00336112   IPI00301869   IPI00409619   IPI00953536   IPI00979379   IPI00985225   IPI00978510   IPI00984726   
Protein Interaction databases
DIP (DOE-UCLA)Q9HBB8
IntAct (EBI)Q9HBB8
FunCoupENSG00000099834
BioGRIDCDHR5
STRING (EMBL)CDHR5
ZODIACCDHR5
Ontologies - Pathways
QuickGOQ9HBB8
Ontology : AmiGOcalcium ion binding  protein binding  clathrin-coated pit  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  beta-catenin binding  apical plasma membrane  cell differentiation  brush border membrane  microvillus membrane  regulation of microvillus length  spanning component of plasma membrane  cell adhesion molecule binding  extracellular exosome  intermicrovillar adhesion  
Ontology : EGO-EBIcalcium ion binding  protein binding  clathrin-coated pit  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  beta-catenin binding  apical plasma membrane  cell differentiation  brush border membrane  microvillus membrane  regulation of microvillus length  spanning component of plasma membrane  cell adhesion molecule binding  extracellular exosome  intermicrovillar adhesion  
NDEx NetworkCDHR5
Atlas of Cancer Signalling NetworkCDHR5
Wikipedia pathwaysCDHR5
Orthology - Evolution
OrthoDB53841
GeneTree (enSembl)ENSG00000099834
Phylogenetic Trees/Animal Genes : TreeFamCDHR5
HOGENOMQ9HBB8
Homologs : HomoloGeneCDHR5
Homology/Alignments : Family Browser (UCSC)CDHR5
Gene fusions - Rearrangements
Fusion : QuiverCDHR5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDHR5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDHR5
dbVarCDHR5
ClinVarCDHR5
1000_GenomesCDHR5 
Exome Variant ServerCDHR5
ExAC (Exome Aggregation Consortium)ENSG00000099834
GNOMAD BrowserENSG00000099834
Varsome BrowserCDHR5
Genetic variants : HAPMAP53841
Genomic Variants (DGV)CDHR5 [DGVbeta]
DECIPHERCDHR5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCDHR5 
Mutations
ICGC Data PortalCDHR5 
TCGA Data PortalCDHR5 
Broad Tumor PortalCDHR5
OASIS PortalCDHR5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCDHR5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCDHR5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CDHR5
DgiDB (Drug Gene Interaction Database)CDHR5
DoCM (Curated mutations)CDHR5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CDHR5 (select a term)
intoGenCDHR5
Cancer3DCDHR5(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606839   
Orphanet
DisGeNETCDHR5
MedgenCDHR5
Genetic Testing Registry CDHR5
NextProtQ9HBB8 [Medical]
TSGene53841
GENETestsCDHR5
Target ValidationCDHR5
Huge Navigator CDHR5 [HugePedia]
snp3D : Map Gene to Disease53841
BioCentury BCIQCDHR5
ClinGenCDHR5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD53841
Chemical/Pharm GKB GenePA165543311
Clinical trialCDHR5
Miscellaneous
canSAR (ICR)CDHR5 (select the gene name)
DataMed IndexCDHR5
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCDHR5
EVEXCDHR5
GoPubMedCDHR5
iHOPCDHR5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 21 15:40:00 CET 2019
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.