Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CDHR5 (cadherin related family member 5)

Identity

Alias (NCBI)MLPCDH
MU-PCDH
MUCDHL
MUPCDH
HGNC (Hugo) CDHR5
HGNC Alias symbFLJ20219
MU-PCDH
HGNC Previous nameMUCDHL
 MUPCDH
HGNC Previous namemucin and cadherin-like
 mucin-like protocadherin
 cadherin-related family member 5
LocusID (NCBI) 53841
Atlas_Id 52395
Location 11p15.5  [Link to chromosome band 11p15]
Location_base_pair Starts at 616565 and ends at 624955 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CDHR5 (11p15.5) / HGS (17q25.3)CDHR5 (11p15.5) / SART3 (12q23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CDHR5   7521
Cards
Entrez_Gene (NCBI)CDHR5    cadherin related family member 5
AliasesMLPCDH; MU-PCDH; MUCDHL; MUPCDH
GeneCards (Weizmann)CDHR5
Ensembl hg19 (Hinxton)ENSG00000099834 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000099834 [Gene_View]  ENSG00000099834 [Sequence]  chr11:616565-624955 [Contig_View]  CDHR5 [Vega]
ICGC DataPortalENSG00000099834
TCGA cBioPortalCDHR5
AceView (NCBI)CDHR5
Genatlas (Paris)CDHR5
SOURCE (Princeton)CDHR5
Genetics Home Reference (NIH)CDHR5
Genomic and cartography
GoldenPath hg38 (UCSC)CDHR5  -     chr11:616565-624955 -  11p15.5   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CDHR5  -     11p15.5   [Description]    (hg19-Feb_2009)
GoldenPathCDHR5 - 11p15.5 [CytoView hg19]  CDHR5 - 11p15.5 [CytoView hg38]
ImmunoBaseENSG00000099834
genome Data Viewer NCBICDHR5 [Mapview hg19]  
OMIM606839   
Gene and transcription
Genbank (Entrez)AA975851 AF258675 AF258676 AF258677 AF258678
RefSeq transcript (Entrez)NM_001171968 NM_017717 NM_021924 NM_031264 NM_031265
RefSeq genomic (Entrez)NC_000011 NT_187586
Consensus coding sequences : CCDS (NCBI)CDHR5
Alternative Splicing GalleryENSG00000099834
Gene ExpressionCDHR5 [ NCBI-GEO ]   CDHR5 [ EBI - ARRAY_EXPRESS ]   CDHR5 [ SEEK ]   CDHR5 [ MEM ]
Gene Expression Viewer (FireBrowse)CDHR5 [ Firebrowse - Broad ]
GenevisibleExpression of CDHR5 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)53841
GTEX Portal (Tissue expression)CDHR5
Human Protein AtlasENSG00000099834-CDHR5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HBB8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HBB8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HBB8
Splice isoforms : SwissVarQ9HBB8
PhosPhoSitePlusQ9HBB8
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin-like_dom    Cadherin-like_sf    Cadherin_CS    Mucdhl   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)CDHR5
Blocks (Seattle)CDHR5
SuperfamilyQ9HBB8
Human Protein Atlas [tissue]ENSG00000099834-CDHR5 [tissue]
Peptide AtlasQ9HBB8
HPRD06021
IPIIPI00336112   IPI00301869   IPI00409619   IPI00953536   IPI00979379   IPI00985225   IPI00978510   IPI00984726   
Protein Interaction databases
DIP (DOE-UCLA)Q9HBB8
IntAct (EBI)Q9HBB8
BioGRIDCDHR5
STRING (EMBL)CDHR5
ZODIACCDHR5
Ontologies - Pathways
QuickGOQ9HBB8
Ontology : AmiGOcalcium ion binding  protein binding  integral component of plasma membrane  clathrin-coated pit  cell adhesion  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  beta-catenin binding  apical plasma membrane  cell differentiation  brush border membrane  microvillus membrane  regulation of microvillus length  spanning component of plasma membrane  cell adhesion molecule binding  extracellular exosome  intermicrovillar adhesion  
Ontology : EGO-EBIcalcium ion binding  protein binding  integral component of plasma membrane  clathrin-coated pit  cell adhesion  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  beta-catenin binding  apical plasma membrane  cell differentiation  brush border membrane  microvillus membrane  regulation of microvillus length  spanning component of plasma membrane  cell adhesion molecule binding  extracellular exosome  intermicrovillar adhesion  
NDEx NetworkCDHR5
Atlas of Cancer Signalling NetworkCDHR5
Wikipedia pathwaysCDHR5
Orthology - Evolution
OrthoDB53841
GeneTree (enSembl)ENSG00000099834
Phylogenetic Trees/Animal Genes : TreeFamCDHR5
HOGENOMQ9HBB8
Homologs : HomoloGeneCDHR5
Homology/Alignments : Family Browser (UCSC)CDHR5
Gene fusions - Rearrangements
Fusion : QuiverCDHR5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDHR5 [hg38]
dbVarCDHR5
ClinVarCDHR5
MonarchCDHR5
1000_GenomesCDHR5 
Exome Variant ServerCDHR5
GNOMAD BrowserENSG00000099834
Varsome BrowserCDHR5
Genomic Variants (DGV)CDHR5 [DGVbeta]
DECIPHERCDHR5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCDHR5 
Mutations
ICGC Data PortalCDHR5 
TCGA Data PortalCDHR5 
Broad Tumor PortalCDHR5
OASIS PortalCDHR5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCDHR5  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCDHR5
Mutations and Diseases : HGMDCDHR5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CDHR5
DgiDB (Drug Gene Interaction Database)CDHR5
DoCM (Curated mutations)CDHR5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CDHR5 (select a term)
intoGenCDHR5
Cancer3DCDHR5(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606839   
Orphanet
DisGeNETCDHR5
MedgenCDHR5
Genetic Testing Registry CDHR5
NextProtQ9HBB8 [Medical]
GENETestsCDHR5
Target ValidationCDHR5
Huge Navigator CDHR5 [HugePedia]
ClinGenCDHR5
Clinical trials, drugs, therapy
MyCancerGenomeCDHR5
Protein Interactions : CTD
Pharm GKB GenePA165543311
PharosQ9HBB8
Clinical trialCDHR5
Miscellaneous
canSAR (ICR)CDHR5 (select the gene name)
HarmonizomeCDHR5
DataMed IndexCDHR5
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCDHR5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Jan 1 18:09:20 CET 2021
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