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CDHR5 (cadherin-related family member 5)

Identity

Other namesMU-PCDH
MUCDHL
MUPCDH
HGNC (Hugo) CDHR5
LocusID (NCBI) 53841
Location 11p15.5
Location_base_pair Starts at 616565 and ends at 625067 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)CDHR5   7521
Entrez_Gene (NCBI)CDHR5  53841  cadherin-related family member 5
Cards
GeneCards (Weizmann)CDHR5
Ensembl (Hinxton)ENSG00000099834 [Gene_View]  chr11:616565-625067 [Contig_View]  CDHR5 [Vega]
AceView (NCBI)CDHR5
Genatlas (Paris)CDHR5
SOURCE (Stanford)NM_001171968 NM_017717 NM_021924 NM_031264 NM_031265
Genomic and cartography
GoldenPath (UCSC)CDHR5  -  11p15.5   chr11:616565-625067 -  11p15.5   [Description]    (hg19-Feb_2009)
EnsemblCDHR5 - 11p15.5 [CytoView]
Mapping of homologs : NCBICDHR5 [Mapview]
OMIM606839   
Gene and transcription
Genbank (Entrez)AA975851 AF258675 AF258676 AF258677 AF258678
RefSeq transcript (SRS)NM_001171968 NM_017717 NM_021924 NM_031264 NM_031265
RefSeq transcript (Entrez)NM_001171968 NM_017717 NM_021924 NM_031264 NM_031265
RefSeq genomic (SRS)AC_000143 NC_000011 NC_018922 NT_009237 NW_001838016 NW_004078070
RefSeq genomic (Entrez)AC_000143 NC_000011 NC_018922 NT_009237 NW_001838016 NW_004078070
Consensus coding sequences : CCDS (NCBI)CDHR5
Cluster EST : UnigeneHs.165619 [ SRS ] Hs.165619 [ NCBI ]
CGAP (NCI)Hs.165619
Alternative Splicing : Fast-db (Paris)GSHG0005442
Alternative Splicing GalleryENSG00000099834
Gene ExpressionCDHR5 [ NCBI-GEO ]   CDHR5 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HBB8 (SRS) Q9HBB8 (Uniprot)
NextProtQ9HBB8
With graphics : InterProQ9HBB8
Splice isoforms : SwissVarQ9HBB8(Swissvar)
Domaine pattern : Prosite (SRS)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (SRS)Cadherin    Cadherin-like    Cadherin_CS   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_CS   
Related proteins : CluSTrQ9HBB8
Domain families : Pfam (SRS)
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)CA (SM00112)  
DMDM53841
Blocks (Seattle)Q9HBB8
Human Protein AtlasENSG00000099834
HPRD06021
IPIIPI00336112   IPI00301869   IPI00409619   IPI00953536   IPI00979379   IPI00985225   IPI00978510   IPI00984726   
Protein Interaction databases
DIP (DOE-UCLA)Q9HBB8
IntAct (EBI)Q9HBB8
FunCoupENSG00000099834
REACTOMECDHR5
Protein Interaction Database53841
BioGRIDCDHR5
InParanoidQ9HBB8
Interologous Interaction database Q9HBB8
IntegromeDBCDHR5
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CDHR5
SNP (GeneSNP Utah)CDHR5
SNP : HGBaseCDHR5
Genetic variants : HAPMAPCDHR5
Somatic Mutations in Cancer : COSMICCDHR5 
CONAN: Copy Number AnalysisCDHR5 
Mutations and Diseases : HGMDCDHR5
OMIM606839   
GENETests606839   
Disease Genetic AssociationCDHR5
Huge Navigator CDHR5 [HugePedia]  CDHR5 [HugeCancerGEM]
Genomic VariantsCDHR5  CDHR5 [DGVbeta]
ClinVarCDHR5
snp3D : Map Gene to Disease53841
General knowledge
Homologs : HomoloGeneCDHR5
Homology/Alignments : Family Browser (UCSC)CDHR5
Phylogenetic Trees/Animal Genes : TreeFamCDHR5
Chemical/Protein Interactions : CTD53841
Chemical/Pharm GKB GenePA165543311
Clinical trialCDHR5
Cancer Resource (Charite)ENSG00000099834
Ontology : AmiGOcalcium ion binding  plasma membrane  cell adhesion  homophilic cell adhesion  membrane  integral to membrane  calcium-dependent cell-cell adhesion  
Ontology : EGO-EBIcalcium ion binding  plasma membrane  cell adhesion  homophilic cell adhesion  membrane  integral to membrane  calcium-dependent cell-cell adhesion  
Other databases
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
PubGeneCDHR5
iHOPCDHR5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 14 17:54:13 CEST 2013
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