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CDIP1 (cell death inducing p53 target 1)

Identity

Alias_namesC16orf5
chromosome 16 open reading frame 5
cell death-inducing p53 target 1
Alias_symbol (synonym)CDIP
LITAFL
Other aliasI1
HGNC (Hugo) CDIP1
LocusID (NCBI) 29965
Atlas_Id 50274
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 4510676 and ends at 4538470 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ADCY9 (16p13.3) / CDIP1 (16p13.3)HMOX2 (16p13.3) / CDIP1 (16p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CDIP1   13234
Cards
Entrez_Gene (NCBI)CDIP1  29965  cell death inducing p53 target 1
AliasesC16orf5; CDIP; I1; LITAFL
GeneCards (Weizmann)CDIP1
Ensembl hg19 (Hinxton)ENSG00000089486 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000089486 [Gene_View]  chr16:4510676-4538470 [Contig_View]  CDIP1 [Vega]
ICGC DataPortalENSG00000089486
TCGA cBioPortalCDIP1
AceView (NCBI)CDIP1
Genatlas (Paris)CDIP1
WikiGenes29965
SOURCE (Princeton)CDIP1
Genetics Home Reference (NIH)CDIP1
Genomic and cartography
GoldenPath hg38 (UCSC)CDIP1  -     chr16:4510676-4538470 -  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CDIP1  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblCDIP1 - 16p13.3 [CytoView hg19]  CDIP1 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBICDIP1 [Mapview hg19]  CDIP1 [Mapview hg38]
OMIM610503   
Gene and transcription
Genbank (Entrez)AF131218 AF195661 AK292036 AK294257 AK302297
RefSeq transcript (Entrez)NM_001199054 NM_001199055 NM_001199056 NM_013399
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_187608
Consensus coding sequences : CCDS (NCBI)CDIP1
Cluster EST : UnigeneHs.654653 [ NCBI ]
CGAP (NCI)Hs.654653
Alternative Splicing GalleryENSG00000089486
Gene ExpressionCDIP1 [ NCBI-GEO ]   CDIP1 [ EBI - ARRAY_EXPRESS ]   CDIP1 [ SEEK ]   CDIP1 [ MEM ]
Gene Expression Viewer (FireBrowse)CDIP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29965
GTEX Portal (Tissue expression)CDIP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H305   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H305  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H305
Splice isoforms : SwissVarQ9H305
PhosPhoSitePlusQ9H305
Domains : Interpro (EBI)LITAF   
Domain families : Pfam (Sanger)zf-LITAF-like (PF10601)   
Domain families : Pfam (NCBI)pfam10601   
Domain families : Smart (EMBL)LITAF (SM00714)  
Conserved Domain (NCBI)CDIP1
DMDM Disease mutations29965
Blocks (Seattle)CDIP1
SuperfamilyQ9H305
Human Protein AtlasENSG00000089486
Peptide AtlasQ9H305
HPRD12676
IPIIPI00003012   IPI00910955   IPI00908617   
Protein Interaction databases
DIP (DOE-UCLA)Q9H305
IntAct (EBI)Q9H305
FunCoupENSG00000089486
BioGRIDCDIP1
STRING (EMBL)CDIP1
ZODIACCDIP1
Ontologies - Pathways
QuickGOQ9H305
Ontology : AmiGOmolecular_function  protein binding  nucleus  nucleus  apoptotic process  tumor necrosis factor-mediated signaling pathway  intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator  
Ontology : EGO-EBImolecular_function  protein binding  nucleus  nucleus  apoptotic process  tumor necrosis factor-mediated signaling pathway  intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator  
NDEx NetworkCDIP1
Atlas of Cancer Signalling NetworkCDIP1
Wikipedia pathwaysCDIP1
Orthology - Evolution
OrthoDB29965
GeneTree (enSembl)ENSG00000089486
Phylogenetic Trees/Animal Genes : TreeFamCDIP1
HOVERGENQ9H305
HOGENOMQ9H305
Homologs : HomoloGeneCDIP1
Homology/Alignments : Family Browser (UCSC)CDIP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDIP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDIP1
dbVarCDIP1
ClinVarCDIP1
1000_GenomesCDIP1 
Exome Variant ServerCDIP1
ExAC (Exome Aggregation Consortium)CDIP1 (select the gene name)
Genetic variants : HAPMAP29965
Genomic Variants (DGV)CDIP1 [DGVbeta]
DECIPHERCDIP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCDIP1 
Mutations
ICGC Data PortalCDIP1 
TCGA Data PortalCDIP1 
Broad Tumor PortalCDIP1
OASIS PortalCDIP1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCDIP1
BioMutasearch CDIP1
DgiDB (Drug Gene Interaction Database)CDIP1
DoCM (Curated mutations)CDIP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CDIP1 (select a term)
intoGenCDIP1
Cancer3DCDIP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610503   
Orphanet
MedgenCDIP1
Genetic Testing Registry CDIP1
NextProtQ9H305 [Medical]
TSGene29965
GENETestsCDIP1
Target ValidationCDIP1
Huge Navigator CDIP1 [HugePedia]
snp3D : Map Gene to Disease29965
BioCentury BCIQCDIP1
ClinGenCDIP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29965
Chemical/Pharm GKB GenePA134879441
Clinical trialCDIP1
Miscellaneous
canSAR (ICR)CDIP1 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCDIP1
EVEXCDIP1
GoPubMedCDIP1
iHOPCDIP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:01:39 CEST 2017

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