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CDIPT-AS1 (CDIPT antisense RNA 1 (head to head))

Identity

Other alias-
HGNC (Hugo) CDIPT-AS1
LocusID (NCBI) 440356
Atlas_Id 61653
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 29863834 and ends at 29868053 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CDIPT-AS1   48609
Cards
Entrez_Gene (NCBI)CDIPT-AS1  440356  CDIPT antisense RNA 1 (head to head)
Aliases
GeneCards (Weizmann)CDIPT-AS1
Ensembl hg19 (Hinxton)ENSG00000214725 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214725 [Gene_View]  chr16:29863834-29868053 [Contig_View]  CDIPT-AS1 [Vega]
ICGC DataPortalENSG00000214725
TCGA cBioPortalCDIPT-AS1
AceView (NCBI)CDIPT-AS1
Genatlas (Paris)CDIPT-AS1
WikiGenes440356
SOURCE (Princeton)CDIPT-AS1
Genetics Home Reference (NIH)CDIPT-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)CDIPT-AS1  -     chr16:29863834-29868053 +  16p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CDIPT-AS1  -     16p11.2   [Description]    (hg19-Feb_2009)
EnsemblCDIPT-AS1 - 16p11.2 [CytoView hg19]  CDIPT-AS1 - 16p11.2 [CytoView hg38]
Mapping of homologs : NCBICDIPT-AS1 [Mapview hg19]  CDIPT-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI269516 AK131031 BC070380 BC119017 BC119809
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CDIPT-AS1
Cluster EST : UnigeneHs.448823 [ NCBI ]
CGAP (NCI)Hs.448823
Alternative Splicing GalleryENSG00000214725
Gene ExpressionCDIPT-AS1 [ NCBI-GEO ]   CDIPT-AS1 [ EBI - ARRAY_EXPRESS ]   CDIPT-AS1 [ SEEK ]   CDIPT-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)CDIPT-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)440356
GTEX Portal (Tissue expression)CDIPT-AS1
Human Protein AtlasENSG00000214725-CDIPT-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DO92   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DO92  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DO92
Splice isoforms : SwissVarP0DO92
PhosPhoSitePlusP0DO92
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CDIPT-AS1
DMDM Disease mutations440356
Blocks (Seattle)CDIPT-AS1
SuperfamilyP0DO92
Human Protein Atlas [tissue]ENSG00000214725-CDIPT-AS1 [tissue]
Peptide AtlasP0DO92
IPIIPI00644856   
Protein Interaction databases
DIP (DOE-UCLA)P0DO92
IntAct (EBI)P0DO92
FunCoupENSG00000214725
BioGRIDCDIPT-AS1
STRING (EMBL)CDIPT-AS1
ZODIACCDIPT-AS1
Ontologies - Pathways
QuickGOP0DO92
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCDIPT-AS1
Atlas of Cancer Signalling NetworkCDIPT-AS1
Wikipedia pathwaysCDIPT-AS1
Orthology - Evolution
OrthoDB440356
GeneTree (enSembl)ENSG00000214725
Phylogenetic Trees/Animal Genes : TreeFamCDIPT-AS1
HOVERGENP0DO92
HOGENOMP0DO92
Homologs : HomoloGeneCDIPT-AS1
Homology/Alignments : Family Browser (UCSC)CDIPT-AS1
Gene fusions - Rearrangements
Fusion: Tumor Portal CDIPT-AS1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDIPT-AS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDIPT-AS1
dbVarCDIPT-AS1
ClinVarCDIPT-AS1
1000_GenomesCDIPT-AS1 
Exome Variant ServerCDIPT-AS1
ExAC (Exome Aggregation Consortium)ENSG00000214725
GNOMAD BrowserENSG00000214725
Genetic variants : HAPMAP440356
Genomic Variants (DGV)CDIPT-AS1 [DGVbeta]
DECIPHERCDIPT-AS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCDIPT-AS1 
Mutations
ICGC Data PortalCDIPT-AS1 
TCGA Data PortalCDIPT-AS1 
Broad Tumor PortalCDIPT-AS1
OASIS PortalCDIPT-AS1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCDIPT-AS1
BioMutasearch CDIPT-AS1
DgiDB (Drug Gene Interaction Database)CDIPT-AS1
DoCM (Curated mutations)CDIPT-AS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CDIPT-AS1 (select a term)
intoGenCDIPT-AS1
Cancer3DCDIPT-AS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCDIPT-AS1
Genetic Testing Registry CDIPT-AS1
NextProtP0DO92 [Medical]
TSGene440356
GENETestsCDIPT-AS1
Target ValidationCDIPT-AS1
Huge Navigator CDIPT-AS1 [HugePedia]
snp3D : Map Gene to Disease440356
BioCentury BCIQCDIPT-AS1
ClinGenCDIPT-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440356
Clinical trialCDIPT-AS1
Miscellaneous
canSAR (ICR)CDIPT-AS1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCDIPT-AS1
EVEXCDIPT-AS1
GoPubMedCDIPT-AS1
iHOPCDIPT-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:42:06 CET 2017

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