Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CDK1 (cyclin-dependent kinase 1)

Identity

Alias_namesCDC2
cell division cycle 2
Alias_symbol (synonym)CDC28A
Other aliasP34CDC2
HGNC (Hugo) CDK1
LocusID (NCBI) 983
Atlas_Id 51245
Location 10q21.2  [Link to chromosome band 10q21]
Location_base_pair Starts at 62538089 and ends at 62546827 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ANK3 (10q21.2) / CDK1 (10q21.2)BASP1 (5p15.1) / CDK1 (10q21.2)CDK1 (10q21.2) / USP24 (1p32.3)
MCOLN2 (1p22.3) / CDK1 (10q21.2)ANK3 10q21.2 / CDK1 10q21.2MCOLN2 1p22.3 / CDK1 10q21.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Lung: Translocations in Squamous Cell Carcinoma


External links

Nomenclature
HGNC (Hugo)CDK1   1722
Cards
Entrez_Gene (NCBI)CDK1  983  cyclin-dependent kinase 1
AliasesCDC2; CDC28A; P34CDC2
GeneCards (Weizmann)CDK1
Ensembl hg19 (Hinxton)ENSG00000170312 [Gene_View]  chr10:62538089-62546827 [Contig_View]  CDK1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000170312 [Gene_View]  chr10:62538089-62546827 [Contig_View]  CDK1 [Vega]
ICGC DataPortalENSG00000170312
TCGA cBioPortalCDK1
AceView (NCBI)CDK1
Genatlas (Paris)CDK1
WikiGenes983
SOURCE (Princeton)CDK1
Genetics Home Reference (NIH)CDK1
Genomic and cartography
GoldenPath hg19 (UCSC)CDK1  -     chr10:62538089-62546827 +  10q21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CDK1  -     10q21.2   [Description]    (hg38-Dec_2013)
EnsemblCDK1 - 10q21.2 [CytoView hg19]  CDK1 - 10q21.2 [CytoView hg38]
Mapping of homologs : NCBICDK1 [Mapview hg19]  CDK1 [Mapview hg38]
OMIM116940   
Gene and transcription
Genbank (Entrez)AA459484 AK291939 AK295741 AM392583 AM393047
RefSeq transcript (Entrez)NM_001130829 NM_001170406 NM_001170407 NM_001320918 NM_001786 NM_033379
RefSeq genomic (Entrez)NC_000010 NC_018921 NG_029877 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)CDK1
Cluster EST : UnigeneHs.732435 [ NCBI ]
CGAP (NCI)Hs.732435
Alternative Splicing GalleryENSG00000170312
Gene ExpressionCDK1 [ NCBI-GEO ]   CDK1 [ EBI - ARRAY_EXPRESS ]   CDK1 [ SEEK ]   CDK1 [ MEM ]
Gene Expression Viewer (FireBrowse)CDK1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)983
GTEX Portal (Tissue expression)CDK1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP06493   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP06493  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP06493
Splice isoforms : SwissVarP06493
Catalytic activity : Enzyme2.7.11.22 [ Enzyme-Expasy ]   2.7.11.222.7.11.22 [ IntEnz-EBI ]   2.7.11.22 [ BRENDA ]   2.7.11.22 [ KEGG ]   
PhosPhoSitePlusP06493
Domaine pattern : Prosite (Expaxy)PROTEIN_KINASE_ATP (PS00107)    PROTEIN_KINASE_DOM (PS50011)    PROTEIN_KINASE_ST (PS00108)   
Domains : Interpro (EBI)Kinase-like_dom    Prot_kinase_dom    Protein_kinase_ATP_BS    Ser/Thr_dual-sp_kinase    Ser/Thr_kinase_AS   
Domain families : Pfam (Sanger)Pkinase (PF00069)   
Domain families : Pfam (NCBI)pfam00069   
Domain families : Smart (EMBL)S_TKc (SM00220)  
Conserved Domain (NCBI)CDK1
DMDM Disease mutations983
Blocks (Seattle)CDK1
PDB (SRS)1LC9    4Y72    4YC6   
PDB (PDBSum)1LC9    4Y72    4YC6   
PDB (IMB)1LC9    4Y72    4YC6   
PDB (RSDB)1LC9    4Y72    4YC6   
Structural Biology KnowledgeBase1LC9    4Y72    4YC6   
SCOP (Structural Classification of Proteins)1LC9    4Y72    4YC6   
CATH (Classification of proteins structures)1LC9    4Y72    4YC6   
SuperfamilyP06493
Human Protein AtlasENSG00000170312
Peptide AtlasP06493
HPRD00302
IPIIPI00073536   IPI00026689   IPI00954937   IPI01017942   IPI00985068   
Protein Interaction databases
DIP (DOE-UCLA)P06493
IntAct (EBI)P06493
FunCoupENSG00000170312
BioGRIDCDK1
STRING (EMBL)CDK1
ZODIACCDK1
Ontologies - Pathways
QuickGOP06493
Ontology : AmiGOG1/S transition of mitotic cell cycle  regulation of transcription involved in G1/S transition of mitotic cell cycle  G2/M transition of mitotic cell cycle  activation of MAPK activity  microtubule cytoskeleton organization  nuclear chromosome, telomeric region  protein kinase activity  protein serine/threonine kinase activity  protein serine/threonine kinase activity  cyclin-dependent protein serine/threonine kinase activity  cyclin-dependent protein serine/threonine kinase activity  protein binding  ATP binding  nucleus  nucleoplasm  cytoplasm  mitochondrion  centrosome  cytosol  spindle microtubule  DNA replication  DNA repair  protein complex assembly  apoptotic process  DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest  mitotic nuclear division  mitotic nuclear envelope disassembly  mitotic G2 DNA damage checkpoint  centrosome cycle  pronuclear fusion  cell aging  RNA polymerase II carboxy-terminal domain kinase activity  response to toxic substance  positive regulation of gene expression  regulation of Schwann cell differentiation  response to organic cyclic compound  response to amine  response to activity  membrane  cell migration  histone phosphorylation  peptidyl-serine phosphorylation  peptidyl-threonine phosphorylation  chromosome condensation  cyclin binding  midbody  Hsp70 protein binding  epithelial cell differentiation  organ regeneration  anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process  positive regulation of protein import into nucleus, translocation  protein localization to kinetochore  histone kinase activity  response to drug  protein ubiquitination involved in ubiquitin-dependent protein catabolic process  negative regulation of apoptotic process  proteasome-mediated ubiquitin-dependent protein catabolic process  response to ethanol  positive regulation of DNA replication  positive regulation of mitotic cell cycle  regulation of embryonic development  response to cadmium ion  response to copper ion  response to axon injury  cell division  negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle  positive regulation of ubiquitin-protein ligase activity involved in regulation of mitotic cell cycle transition  regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle  ventricular cardiac muscle cell development  positive regulation of cardiac muscle cell proliferation  extracellular exosome  cellular response to hydrogen peroxide  mitotic spindle  Golgi disassembly  positive regulation of protein localization to nucleus  
Ontology : EGO-EBIG1/S transition of mitotic cell cycle  regulation of transcription involved in G1/S transition of mitotic cell cycle  G2/M transition of mitotic cell cycle  activation of MAPK activity  microtubule cytoskeleton organization  nuclear chromosome, telomeric region  protein kinase activity  protein serine/threonine kinase activity  protein serine/threonine kinase activity  cyclin-dependent protein serine/threonine kinase activity  cyclin-dependent protein serine/threonine kinase activity  protein binding  ATP binding  nucleus  nucleoplasm  cytoplasm  mitochondrion  centrosome  cytosol  spindle microtubule  DNA replication  DNA repair  protein complex assembly  apoptotic process  DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest  mitotic nuclear division  mitotic nuclear envelope disassembly  mitotic G2 DNA damage checkpoint  centrosome cycle  pronuclear fusion  cell aging  RNA polymerase II carboxy-terminal domain kinase activity  response to toxic substance  positive regulation of gene expression  regulation of Schwann cell differentiation  response to organic cyclic compound  response to amine  response to activity  membrane  cell migration  histone phosphorylation  peptidyl-serine phosphorylation  peptidyl-threonine phosphorylation  chromosome condensation  cyclin binding  midbody  Hsp70 protein binding  epithelial cell differentiation  organ regeneration  anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process  positive regulation of protein import into nucleus, translocation  protein localization to kinetochore  histone kinase activity  response to drug  protein ubiquitination involved in ubiquitin-dependent protein catabolic process  negative regulation of apoptotic process  proteasome-mediated ubiquitin-dependent protein catabolic process  response to ethanol  positive regulation of DNA replication  positive regulation of mitotic cell cycle  regulation of embryonic development  response to cadmium ion  response to copper ion  response to axon injury  cell division  negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle  positive regulation of ubiquitin-protein ligase activity involved in regulation of mitotic cell cycle transition  regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle  ventricular cardiac muscle cell development  positive regulation of cardiac muscle cell proliferation  extracellular exosome  cellular response to hydrogen peroxide  mitotic spindle  Golgi disassembly  positive regulation of protein localization to nucleus  
Pathways : BIOCARTACell Cycle: G2/M Checkpoint [Genes]    Regulation of Splicing through Sam68 [Genes]    How Progesterone Initiates the Oocyte Maturation [Genes]    Sonic Hedgehog (SHH) Receptor Ptc1 Regulates cell cycle [Genes]    AKAP95 role in mitosis and chromosome dynamics [Genes]    Cyclins and Cell Cycle Regulation [Genes]    Activation of Src by Protein-tyrosine phosphatase alpha [Genes]    Stathmin and breast cancer resistance to antimicrotubule agents [Genes]    cdc25 and chk1 Regulatory Pathway in response to DNA damage [Genes]    RB Tumor Suppressor/Checkpoint Signaling in response to DNA damage [Genes]    Cell Cycle: G1/S Check Point [Genes]    Protein Kinase A at the Centrosome [Genes]    Estrogen-responsive protein Efp controls cell cycle and breast tumors growth [Genes]   
Pathways : KEGGCell cycle    Oocyte meiosis    p53 signaling pathway    Gap junction    Progesterone-mediated oocyte maturation    Herpes simplex infection    Epstein-Barr virus infection    Viral carcinogenesis   
NDEx NetworkCDK1
Atlas of Cancer Signalling NetworkCDK1
Wikipedia pathwaysCDK1
Orthology - Evolution
OrthoDB983
GeneTree (enSembl)ENSG00000170312
Phylogenetic Trees/Animal Genes : TreeFamCDK1
HOVERGENP06493
HOGENOMP06493
Homologs : HomoloGeneCDK1
Homology/Alignments : Family Browser (UCSC)CDK1
Gene fusions - Rearrangements
Fusion : MitelmanANK3/CDK1 [10q21.2/10q21.2]  [t(10;10)(q21;q21)]  
Fusion : MitelmanCDK1/USP24 [10q21.2/1p32.3]  [t(1;10)(p32;q21)]  
Fusion : MitelmanMCOLN2/CDK1 [1p22.3/10q21.2]  [t(1;10)(p22;q21)]  
Fusion: TCGAANK3 10q21.2 CDK1 10q21.2 BRCA
Fusion: TCGAMCOLN2 1p22.3 CDK1 10q21.2 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDK1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDK1
dbVarCDK1
ClinVarCDK1
1000_GenomesCDK1 
Exome Variant ServerCDK1
ExAC (Exome Aggregation Consortium)CDK1 (select the gene name)
Genetic variants : HAPMAP983
Genomic Variants (DGV)CDK1 [DGVbeta]
DECIPHER (Syndromes)10:62538089-62546827  ENSG00000170312
CONAN: Copy Number AnalysisCDK1 
Mutations
ICGC Data PortalCDK1 
TCGA Data PortalCDK1 
Broad Tumor PortalCDK1
OASIS PortalCDK1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCDK1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCDK1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CDK1
DgiDB (Drug Gene Interaction Database)CDK1
DoCM (Curated mutations)CDK1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CDK1 (select a term)
intoGenCDK1
Cancer3DCDK1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM116940   
Orphanet
MedgenCDK1
Genetic Testing Registry CDK1
NextProtP06493 [Medical]
TSGene983
GENETestsCDK1
Huge Navigator CDK1 [HugePedia]
snp3D : Map Gene to Disease983
BioCentury BCIQCDK1
ClinGenCDK1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD983
Chemical/Pharm GKB GenePA99
Clinical trialCDK1
Miscellaneous
canSAR (ICR)CDK1 (select the gene name)
Probes
Litterature
PubMed499 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCDK1
EVEXCDK1
GoPubMedCDK1
iHOPCDK1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:59:42 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.