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CDKN2A-AS1 (CDKN2A antisense RNA 1 (head to head))

Identity

Alias_namesC9orf53
chromosome 9 open reading frame 53
Alias_symbol (synonym)bA149I2.3
Other alias
HGNC (Hugo) CDKN2A-AS1
LocusID (NCBI) 51198
Atlas_Id 54186
Location 9p21.3  [Link to chromosome band 9p21]
Location_base_pair Starts at 21967138 and ends at 21967739 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
EIF4EBP1 (8p11.23) / CDKN2A-AS1 (9p21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Lung: Translocations in Squamous Cell Carcinoma


External links

Nomenclature
HGNC (Hugo)CDKN2A-AS1   23831
Cards
Entrez_Gene (NCBI)CDKN2A-AS1  51198  CDKN2A antisense RNA 1 (head to head)
AliasesC9orf53; bA149I2.3
GeneCards (Weizmann)CDKN2A-AS1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:21967138-21967739 [Contig_View]  CDKN2A-AS1 [Vega]
TCGA cBioPortalCDKN2A-AS1
AceView (NCBI)CDKN2A-AS1
Genatlas (Paris)CDKN2A-AS1
WikiGenes51198
SOURCE (Princeton)CDKN2A-AS1
Genetics Home Reference (NIH)CDKN2A-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)CDKN2A-AS1  -     chr9:21967138-21967739 +  9p21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CDKN2A-AS1  -     9p21.3   [Description]    (hg19-Feb_2009)
EnsemblCDKN2A-AS1 - 9p21.3 [CytoView hg19]  CDKN2A-AS1 - 9p21.3 [CytoView hg38]
Mapping of homologs : NCBICDKN2A-AS1 [Mapview hg19]  CDKN2A-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF211119 BX091351
RefSeq transcript (Entrez)NM_016349
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CDKN2A-AS1
Cluster EST : UnigeneHs.721053 [ NCBI ]
CGAP (NCI)Hs.721053
Gene ExpressionCDKN2A-AS1 [ NCBI-GEO ]   CDKN2A-AS1 [ EBI - ARRAY_EXPRESS ]   CDKN2A-AS1 [ SEEK ]   CDKN2A-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)CDKN2A-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51198
GTEX Portal (Tissue expression)CDKN2A-AS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UH64   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UH64  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UH64
Splice isoforms : SwissVarQ9UH64
PhosPhoSitePlusQ9UH64
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CDKN2A-AS1
DMDM Disease mutations51198
Blocks (Seattle)CDKN2A-AS1
SuperfamilyQ9UH64
Peptide AtlasQ9UH64
IPIIPI00005618   
Protein Interaction databases
DIP (DOE-UCLA)Q9UH64
IntAct (EBI)Q9UH64
BioGRIDCDKN2A-AS1
STRING (EMBL)CDKN2A-AS1
ZODIACCDKN2A-AS1
Ontologies - Pathways
QuickGOQ9UH64
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCDKN2A-AS1
Atlas of Cancer Signalling NetworkCDKN2A-AS1
Wikipedia pathwaysCDKN2A-AS1
Orthology - Evolution
OrthoDB51198
Phylogenetic Trees/Animal Genes : TreeFamCDKN2A-AS1
HOVERGENQ9UH64
HOGENOMQ9UH64
Homologs : HomoloGeneCDKN2A-AS1
Homology/Alignments : Family Browser (UCSC)CDKN2A-AS1
Gene fusions - Rearrangements
Fusion : MitelmanEIF4EBP1/CDKN2A-AS1 [8p11.23/9p21.3]  [t(8;9)(p11;p21)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDKN2A-AS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDKN2A-AS1
dbVarCDKN2A-AS1
ClinVarCDKN2A-AS1
1000_GenomesCDKN2A-AS1 
Exome Variant ServerCDKN2A-AS1
ExAC (Exome Aggregation Consortium)CDKN2A-AS1 (select the gene name)
Genetic variants : HAPMAP51198
Genomic Variants (DGV)CDKN2A-AS1 [DGVbeta]
DECIPHERCDKN2A-AS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCDKN2A-AS1 
Mutations
ICGC Data PortalCDKN2A-AS1 
TCGA Data PortalCDKN2A-AS1 
Broad Tumor PortalCDKN2A-AS1
OASIS PortalCDKN2A-AS1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCDKN2A-AS1
BioMutasearch CDKN2A-AS1
DgiDB (Drug Gene Interaction Database)CDKN2A-AS1
DoCM (Curated mutations)CDKN2A-AS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CDKN2A-AS1 (select a term)
intoGenCDKN2A-AS1
Cancer3DCDKN2A-AS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCDKN2A-AS1
Genetic Testing Registry CDKN2A-AS1
NextProtQ9UH64 [Medical]
TSGene51198
GENETestsCDKN2A-AS1
Target ValidationCDKN2A-AS1
Huge Navigator CDKN2A-AS1 [HugePedia]
snp3D : Map Gene to Disease51198
BioCentury BCIQCDKN2A-AS1
ClinGenCDKN2A-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51198
Chemical/Pharm GKB GenePA134895928
Clinical trialCDKN2A-AS1
Miscellaneous
canSAR (ICR)CDKN2A-AS1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCDKN2A-AS1
EVEXCDKN2A-AS1
GoPubMedCDKN2A-AS1
iHOPCDKN2A-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:01:46 CEST 2017

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