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CDNF (cerebral dopamine neurotrophic factor)

Identity

Alias (NCBI)ARMETL1
HGNC (Hugo) CDNF
HGNC Alias nameconserved dopamine neurotrophic factor
HGNC Previous nameARMETL1
HGNC Previous namearginine-rich, mutated in early stage tumors-like 1
LocusID (NCBI) 441549
Atlas_Id 42910
Location 10p13  [Link to chromosome band 10p13]
Location_base_pair Starts at 14819245 and ends at 14838037 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CDNF   24913
Cards
Entrez_Gene (NCBI)CDNF  441549  cerebral dopamine neurotrophic factor
AliasesARMETL1
GeneCards (Weizmann)CDNF
Ensembl hg19 (Hinxton)ENSG00000185267 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185267 [Gene_View]  ENSG00000185267 [Sequence]  chr10:14819245-14838037 [Contig_View]  CDNF [Vega]
ICGC DataPortalENSG00000185267
TCGA cBioPortalCDNF
AceView (NCBI)CDNF
Genatlas (Paris)CDNF
WikiGenes441549
SOURCE (Princeton)CDNF
Genetics Home Reference (NIH)CDNF
Genomic and cartography
GoldenPath hg38 (UCSC)CDNF  -     chr10:14819245-14838037 -  10p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CDNF  -     10p13   [Description]    (hg19-Feb_2009)
GoldenPathCDNF - 10p13 [CytoView hg19]  CDNF - 10p13 [CytoView hg38]
ImmunoBaseENSG00000185267
genome Data Viewer NCBICDNF [Mapview hg19]  
OMIM611233   
Gene and transcription
Genbank (Entrez)AK131035 AV657190 BC037872 BC133042 BC133044
RefSeq transcript (Entrez)NM_001029954
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CDNF
Alternative Splicing GalleryENSG00000185267
Gene ExpressionCDNF [ NCBI-GEO ]   CDNF [ EBI - ARRAY_EXPRESS ]   CDNF [ SEEK ]   CDNF [ MEM ]
Gene Expression Viewer (FireBrowse)CDNF [ Firebrowse - Broad ]
GenevisibleExpression of CDNF in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)441549
GTEX Portal (Tissue expression)CDNF
Human Protein AtlasENSG00000185267-CDNF [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ49AH0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ49AH0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ49AH0
Splice isoforms : SwissVarQ49AH0
PhosPhoSitePlusQ49AH0
Domains : Interpro (EBI)Armet_prot    SAP_dom_sf   
Domain families : Pfam (Sanger)Armet (PF10208)   
Domain families : Pfam (NCBI)pfam10208   
Conserved Domain (NCBI)CDNF
DMDM Disease mutations441549
Blocks (Seattle)CDNF
PDB (RSDB)2LPN    2W50    4BIT   
PDB Europe2LPN    2W50    4BIT   
PDB (PDBSum)2LPN    2W50    4BIT   
PDB (IMB)2LPN    2W50    4BIT   
Structural Biology KnowledgeBase2LPN    2W50    4BIT   
SCOP (Structural Classification of Proteins)2LPN    2W50    4BIT   
CATH (Classification of proteins structures)2LPN    2W50    4BIT   
SuperfamilyQ49AH0
Human Protein Atlas [tissue]ENSG00000185267-CDNF [tissue]
Peptide AtlasQ49AH0
IPIIPI00646351   IPI00647956   
Protein Interaction databases
DIP (DOE-UCLA)Q49AH0
IntAct (EBI)Q49AH0
FunCoupENSG00000185267
BioGRIDCDNF
STRING (EMBL)CDNF
ZODIACCDNF
Ontologies - Pathways
QuickGOQ49AH0
Ontology : AmiGOextracellular space  endoplasmic reticulum  signal transduction  growth factor activity  neuron projection development  dopaminergic neuron differentiation  
Ontology : EGO-EBIextracellular space  endoplasmic reticulum  signal transduction  growth factor activity  neuron projection development  dopaminergic neuron differentiation  
NDEx NetworkCDNF
Atlas of Cancer Signalling NetworkCDNF
Wikipedia pathwaysCDNF
Orthology - Evolution
OrthoDB441549
GeneTree (enSembl)ENSG00000185267
Phylogenetic Trees/Animal Genes : TreeFamCDNF
HOGENOMQ49AH0
Homologs : HomoloGeneCDNF
Homology/Alignments : Family Browser (UCSC)CDNF
Gene fusions - Rearrangements
Fusion : QuiverCDNF
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDNF [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDNF
dbVarCDNF
ClinVarCDNF
MonarchCDNF
1000_GenomesCDNF 
Exome Variant ServerCDNF
GNOMAD BrowserENSG00000185267
Varsome BrowserCDNF
Genetic variants : HAPMAP441549
Genomic Variants (DGV)CDNF [DGVbeta]
DECIPHERCDNF [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCDNF 
Mutations
ICGC Data PortalCDNF 
TCGA Data PortalCDNF 
Broad Tumor PortalCDNF
OASIS PortalCDNF [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCDNF
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CDNF
DgiDB (Drug Gene Interaction Database)CDNF
DoCM (Curated mutations)CDNF (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CDNF (select a term)
intoGenCDNF
Cancer3DCDNF(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611233   
Orphanet
DisGeNETCDNF
MedgenCDNF
Genetic Testing Registry CDNF
NextProtQ49AH0 [Medical]
TSGene441549
GENETestsCDNF
Target ValidationCDNF
Huge Navigator CDNF [HugePedia]
snp3D : Map Gene to Disease441549
BioCentury BCIQCDNF
ClinGenCDNF
Clinical trials, drugs, therapy
Protein Interactions : CTD441549
Pharm GKB GenePA165548325
Clinical trialCDNF
Miscellaneous
canSAR (ICR)CDNF (select the gene name)
HarmonizomeCDNF
DataMed IndexCDNF
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCDNF
EVEXCDNF
GoPubMedCDNF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 14 14:05:28 CEST 2020
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