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CDNF (cerebral dopamine neurotrophic factor)

Identity

Alias_namesARMETL1
arginine-rich
Other alias
HGNC (Hugo) CDNF
LocusID (NCBI) 441549
Atlas_Id 42910
Location 10p13  [Link to chromosome band 10p13]
Location_base_pair Starts at 14861251 and ends at 14879983 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CDNF   24913
Cards
Entrez_Gene (NCBI)CDNF  441549  cerebral dopamine neurotrophic factor
AliasesARMETL1
GeneCards (Weizmann)CDNF
Ensembl hg19 (Hinxton)ENSG00000185267 [Gene_View]  chr10:14861251-14879983 [Contig_View]  CDNF [Vega]
Ensembl hg38 (Hinxton)ENSG00000185267 [Gene_View]  chr10:14861251-14879983 [Contig_View]  CDNF [Vega]
ICGC DataPortalENSG00000185267
TCGA cBioPortalCDNF
AceView (NCBI)CDNF
Genatlas (Paris)CDNF
WikiGenes441549
SOURCE (Princeton)CDNF
Genetics Home Reference (NIH)CDNF
Genomic and cartography
GoldenPath hg19 (UCSC)CDNF  -     chr10:14861251-14879983 -  10p13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CDNF  -     10p13   [Description]    (hg38-Dec_2013)
EnsemblCDNF - 10p13 [CytoView hg19]  CDNF - 10p13 [CytoView hg38]
Mapping of homologs : NCBICDNF [Mapview hg19]  CDNF [Mapview hg38]
OMIM611233   
Gene and transcription
Genbank (Entrez)AK131035 AV657190 BC037872 BC133042 BC133044
RefSeq transcript (Entrez)NM_001029954
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_008705 NW_004929370
Consensus coding sequences : CCDS (NCBI)CDNF
Cluster EST : UnigeneHs.559067 [ NCBI ]
CGAP (NCI)Hs.559067
Alternative Splicing GalleryENSG00000185267
Gene ExpressionCDNF [ NCBI-GEO ]   CDNF [ EBI - ARRAY_EXPRESS ]   CDNF [ SEEK ]   CDNF [ MEM ]
Gene Expression Viewer (FireBrowse)CDNF [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)441549
GTEX Portal (Tissue expression)CDNF
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ49AH0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ49AH0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ49AH0
Splice isoforms : SwissVarQ49AH0
PhosPhoSitePlusQ49AH0
Domains : Interpro (EBI)Armet_prot   
Domain families : Pfam (Sanger)Armet (PF10208)   
Domain families : Pfam (NCBI)pfam10208   
Conserved Domain (NCBI)CDNF
DMDM Disease mutations441549
Blocks (Seattle)CDNF
PDB (SRS)2LPN    2W50    4BIT   
PDB (PDBSum)2LPN    2W50    4BIT   
PDB (IMB)2LPN    2W50    4BIT   
PDB (RSDB)2LPN    2W50    4BIT   
Structural Biology KnowledgeBase2LPN    2W50    4BIT   
SCOP (Structural Classification of Proteins)2LPN    2W50    4BIT   
CATH (Classification of proteins structures)2LPN    2W50    4BIT   
SuperfamilyQ49AH0
Human Protein AtlasENSG00000185267
Peptide AtlasQ49AH0
IPIIPI00646351   IPI00647956   
Protein Interaction databases
DIP (DOE-UCLA)Q49AH0
IntAct (EBI)Q49AH0
FunCoupENSG00000185267
BioGRIDCDNF
STRING (EMBL)CDNF
ZODIACCDNF
Ontologies - Pathways
QuickGOQ49AH0
Ontology : AmiGOextracellular region  growth factor activity  
Ontology : EGO-EBIextracellular region  growth factor activity  
NDEx NetworkCDNF
Atlas of Cancer Signalling NetworkCDNF
Wikipedia pathwaysCDNF
Orthology - Evolution
OrthoDB441549
GeneTree (enSembl)ENSG00000185267
Phylogenetic Trees/Animal Genes : TreeFamCDNF
HOVERGENQ49AH0
HOGENOMQ49AH0
Homologs : HomoloGeneCDNF
Homology/Alignments : Family Browser (UCSC)CDNF
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDNF [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDNF
dbVarCDNF
ClinVarCDNF
1000_GenomesCDNF 
Exome Variant ServerCDNF
ExAC (Exome Aggregation Consortium)CDNF (select the gene name)
Genetic variants : HAPMAP441549
Genomic Variants (DGV)CDNF [DGVbeta]
DECIPHER (Syndromes)10:14861251-14879983  ENSG00000185267
CONAN: Copy Number AnalysisCDNF 
Mutations
ICGC Data PortalCDNF 
TCGA Data PortalCDNF 
Broad Tumor PortalCDNF
OASIS PortalCDNF [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCDNF  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCDNF
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CDNF
DgiDB (Drug Gene Interaction Database)CDNF
DoCM (Curated mutations)CDNF (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CDNF (select a term)
intoGenCDNF
Cancer3DCDNF(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611233   
Orphanet
MedgenCDNF
Genetic Testing Registry CDNF
NextProtQ49AH0 [Medical]
TSGene441549
GENETestsCDNF
Huge Navigator CDNF [HugePedia]
snp3D : Map Gene to Disease441549
BioCentury BCIQCDNF
ClinGenCDNF
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD441549
Chemical/Pharm GKB GenePA165548325
Clinical trialCDNF
Miscellaneous
canSAR (ICR)CDNF (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCDNF
EVEXCDNF
GoPubMedCDNF
iHOPCDNF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:59:50 CET 2017

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