Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CDO1 (cysteine dioxygenase type 1)

Identity

Alias_namescysteine dioxygenase
Other aliasCDO-I
HGNC (Hugo) CDO1
LocusID (NCBI) 1036
Atlas_Id 51629
Location 5q22.3  [Link to chromosome band 5q22]
Location_base_pair Starts at 115804733 and ends at 115816708 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CDO1   1795
Cards
Entrez_Gene (NCBI)CDO1  1036  cysteine dioxygenase type 1
AliasesCDO-I
GeneCards (Weizmann)CDO1
Ensembl hg19 (Hinxton)ENSG00000129596 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000129596 [Gene_View]  chr5:115804733-115816708 [Contig_View]  CDO1 [Vega]
ICGC DataPortalENSG00000129596
TCGA cBioPortalCDO1
AceView (NCBI)CDO1
Genatlas (Paris)CDO1
WikiGenes1036
SOURCE (Princeton)CDO1
Genetics Home Reference (NIH)CDO1
Genomic and cartography
GoldenPath hg38 (UCSC)CDO1  -     chr5:115804733-115816708 -  5q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CDO1  -     5q22.3   [Description]    (hg19-Feb_2009)
EnsemblCDO1 - 5q22.3 [CytoView hg19]  CDO1 - 5q22.3 [CytoView hg38]
Mapping of homologs : NCBICDO1 [Mapview hg19]  CDO1 [Mapview hg38]
OMIM603943   
Gene and transcription
Genbank (Entrez)AK130357 AK314231 AL534761 BC024241 BG197197
RefSeq transcript (Entrez)NM_001323565 NM_001323566 NM_001323567 NM_001801
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CDO1
Cluster EST : UnigeneHs.442378 [ NCBI ]
CGAP (NCI)Hs.442378
Alternative Splicing GalleryENSG00000129596
Gene ExpressionCDO1 [ NCBI-GEO ]   CDO1 [ EBI - ARRAY_EXPRESS ]   CDO1 [ SEEK ]   CDO1 [ MEM ]
Gene Expression Viewer (FireBrowse)CDO1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1036
GTEX Portal (Tissue expression)CDO1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ16878   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ16878  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ16878
Splice isoforms : SwissVarQ16878
Catalytic activity : Enzyme1.13.11.20 [ Enzyme-Expasy ]   1.13.11.201.13.11.20 [ IntEnz-EBI ]   1.13.11.20 [ BRENDA ]   1.13.11.20 [ KEGG ]   
PhosPhoSitePlusQ16878
Domains : Interpro (EBI)CDO_1    RmlC-like_jellyroll    RmlC_Cupin   
Domain families : Pfam (Sanger)CDO_I (PF05995)   
Domain families : Pfam (NCBI)pfam05995   
Conserved Domain (NCBI)CDO1
DMDM Disease mutations1036
Blocks (Seattle)CDO1
PDB (SRS)2IC1   
PDB (PDBSum)2IC1   
PDB (IMB)2IC1   
PDB (RSDB)2IC1   
Structural Biology KnowledgeBase2IC1   
SCOP (Structural Classification of Proteins)2IC1   
CATH (Classification of proteins structures)2IC1   
SuperfamilyQ16878
Human Protein AtlasENSG00000129596
Peptide AtlasQ16878
HPRD06806
IPIIPI00294447   
Protein Interaction databases
DIP (DOE-UCLA)Q16878
IntAct (EBI)Q16878
FunCoupENSG00000129596
BioGRIDCDO1
STRING (EMBL)CDO1
ZODIACCDO1
Ontologies - Pathways
QuickGOQ16878
Ontology : AmiGOsulfur amino acid biosynthetic process  cytosol  cysteine metabolic process  inflammatory response  lactation  ferrous iron binding  cysteine dioxygenase activity  cysteine dioxygenase activity  L-cysteine catabolic process  response to glucagon  taurine biosynthetic process  taurine biosynthetic process  response to amino acid  response to ethanol  response to glucocorticoid  response to cAMP  oxidation-reduction process  
Ontology : EGO-EBIsulfur amino acid biosynthetic process  cytosol  cysteine metabolic process  inflammatory response  lactation  ferrous iron binding  cysteine dioxygenase activity  cysteine dioxygenase activity  L-cysteine catabolic process  response to glucagon  taurine biosynthetic process  taurine biosynthetic process  response to amino acid  response to ethanol  response to glucocorticoid  response to cAMP  oxidation-reduction process  
Pathways : KEGGCysteine and methionine metabolism    Taurine and hypotaurine metabolism   
NDEx NetworkCDO1
Atlas of Cancer Signalling NetworkCDO1
Wikipedia pathwaysCDO1
Orthology - Evolution
OrthoDB1036
GeneTree (enSembl)ENSG00000129596
Phylogenetic Trees/Animal Genes : TreeFamCDO1
HOVERGENQ16878
HOGENOMQ16878
Homologs : HomoloGeneCDO1
Homology/Alignments : Family Browser (UCSC)CDO1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDO1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDO1
dbVarCDO1
ClinVarCDO1
1000_GenomesCDO1 
Exome Variant ServerCDO1
ExAC (Exome Aggregation Consortium)CDO1 (select the gene name)
Genetic variants : HAPMAP1036
Genomic Variants (DGV)CDO1 [DGVbeta]
DECIPHERCDO1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCDO1 
Mutations
ICGC Data PortalCDO1 
TCGA Data PortalCDO1 
Broad Tumor PortalCDO1
OASIS PortalCDO1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCDO1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCDO1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CDO1
DgiDB (Drug Gene Interaction Database)CDO1
DoCM (Curated mutations)CDO1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CDO1 (select a term)
intoGenCDO1
Cancer3DCDO1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603943   
Orphanet
MedgenCDO1
Genetic Testing Registry CDO1
NextProtQ16878 [Medical]
TSGene1036
GENETestsCDO1
Target ValidationCDO1
Huge Navigator CDO1 [HugePedia]
snp3D : Map Gene to Disease1036
BioCentury BCIQCDO1
ClinGenCDO1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1036
Chemical/Pharm GKB GenePA26327
Clinical trialCDO1
Miscellaneous
canSAR (ICR)CDO1 (select the gene name)
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCDO1
EVEXCDO1
GoPubMedCDO1
iHOPCDO1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:27:51 CEST 2017

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