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CDON (cell adhesion associated, oncogene regulated)

Identity

Other namesCDO
CDON1
HPE11
ORCAM
HGNC (Hugo) CDON
LocusID (NCBI) 50937
Location 11q24.2
Location_base_pair Starts at 125826713 and ends at 125933187 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CDON   17104
Cards
Entrez_Gene (NCBI)CDON  50937  cell adhesion associated, oncogene regulated
GeneCards (Weizmann)CDON
Ensembl (Hinxton)ENSG00000064309 [Gene_View]  chr11:125826713-125933187 [Contig_View]  CDON [Vega]
AceView (NCBI)CDON
Genatlas (Paris)CDON
WikiGenes50937
SOURCE (Princeton)NM_001243597 NM_016952
Genomic and cartography
GoldenPath (UCSC)CDON  -  11q24.2   chr11:125826713-125933187 -  11q24.2   [Description]    (hg19-Feb_2009)
EnsemblCDON - 11q24.2 [CytoView]
Mapping of homologs : NCBICDON [Mapview]
OMIM608707   614226   
Gene and transcription
Genbank (Entrez)AB209396 AF004841 AI190027 AK022986 AK309694
RefSeq transcript (Entrez)NM_001243597 NM_016952
RefSeq genomic (Entrez)AC_000143 NC_000011 NC_018922 NG_029776 NT_033899 NW_001838043 NW_004929381
Consensus coding sequences : CCDS (NCBI)CDON
Cluster EST : UnigeneHs.38034 [ NCBI ]
CGAP (NCI)Hs.38034
Alternative Splicing : Fast-db (Paris)GSHG0006302
Alternative Splicing GalleryENSG00000064309
Gene ExpressionCDON [ NCBI-GEO ]     CDON [ SEEK ]   CDON [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ4KMG0 (Uniprot)
NextProtQ4KMG0  [Medical]
With graphics : InterProQ4KMG0
Splice isoforms : SwissVarQ4KMG0 (Swissvar)
Domaine pattern : Prosite (Expaxy)FN3 (PS50853)    IG_LIKE (PS50835)   
Domains : Interpro (EBI)Fibronectin_type3    Ig-like_dom    Ig-like_fold    Ig_I-set    Ig_sub    Ig_sub2   
Related proteins : CluSTrQ4KMG0
Domain families : Pfam (Sanger)fn3 (PF00041)    I-set (PF07679)   
Domain families : Pfam (NCBI)pfam00041    pfam07679   
Domain families : Smart (EMBL)FN3 (SM00060)  IG (SM00409)  IGc2 (SM00408)  
DMDM Disease mutations50937
Blocks (Seattle)Q4KMG0
PDB (SRS)3D1M    3N1F    3N1Q   
PDB (PDBSum)3D1M    3N1F    3N1Q   
PDB (IMB)3D1M    3N1F    3N1Q   
PDB (RSDB)3D1M    3N1F    3N1Q   
Human Protein AtlasENSG00000064309
Peptide AtlasQ4KMG0
HPRD16372
IPIIPI00027220   IPI00743564   IPI00980836   IPI00981836   IPI00985143   IPI00981172   IPI00977673   IPI00983438   
Protein Interaction databases
DIP (DOE-UCLA)Q4KMG0
IntAct (EBI)Q4KMG0
FunCoupENSG00000064309
BioGRIDCDON
InParanoidQ4KMG0
Interologous Interaction database Q4KMG0
IntegromeDBCDON
STRING (EMBL)CDON
Ontologies - Pathways
Ontology : AmiGOcell fate specification  positive regulation of protein phosphorylation  lens development in camera-type eye  protein binding  plasma membrane  cell adhesion  smoothened signaling pathway  myoblast fusion  anterior/posterior pattern specification  embryonic body morphogenesis  satellite cell differentiation  integral to membrane  cerebral cortex development  extracellular matrix  muscle cell differentiation  positive regulation of MAPK cascade  regulation of protein heterodimerization activity  positive regulation of neuron differentiation  positive regulation of transcription from RNA polymerase II promoter  positive regulation of skeletal muscle tissue development  positive regulation of small GTPase mediated signal transduction  positive regulation of muscle cell differentiation  embryonic retina morphogenesis in camera-type eye  positive regulation of neural precursor cell proliferation  
Ontology : EGO-EBIcell fate specification  positive regulation of protein phosphorylation  lens development in camera-type eye  protein binding  plasma membrane  cell adhesion  smoothened signaling pathway  myoblast fusion  anterior/posterior pattern specification  embryonic body morphogenesis  satellite cell differentiation  integral to membrane  cerebral cortex development  extracellular matrix  muscle cell differentiation  positive regulation of MAPK cascade  regulation of protein heterodimerization activity  positive regulation of neuron differentiation  positive regulation of transcription from RNA polymerase II promoter  positive regulation of skeletal muscle tissue development  positive regulation of small GTPase mediated signal transduction  positive regulation of muscle cell differentiation  embryonic retina morphogenesis in camera-type eye  positive regulation of neural precursor cell proliferation  
REACTOMECDON
Protein Interaction DatabaseCDON
Wikipedia pathwaysCDON
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CDON
SNP (GeneSNP Utah)CDON
SNP : HGBaseCDON
Genetic variants : HAPMAPCDON
1000_GenomesCDON 
ICGC programENSG00000064309 
Somatic Mutations in Cancer : COSMICCDON 
CONAN: Copy Number AnalysisCDON 
Mutations and Diseases : HGMDCDON
OMIM608707    614226   
GENETestsCDON
Disease Genetic AssociationCDON
Huge Navigator CDON [HugePedia]  CDON [HugeCancerGEM]
Genomic VariantsCDON  CDON [DGVbeta]
Exome VariantCDON
dbVarCDON
ClinVarCDON
snp3D : Map Gene to Disease50937
General knowledge
Homologs : HomoloGeneCDON
Homology/Alignments : Family Browser (UCSC)CDON
Phylogenetic Trees/Animal Genes : TreeFamCDON
Chemical/Protein Interactions : CTD50937
Chemical/Pharm GKB GenePA26328
Clinical trialCDON
Cancer Resource (Charite)ENSG00000064309
Other databases
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
CoreMineCDON
iHOPCDON
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Apr 18 17:07:06 CEST 2014

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