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CDPF1 (cysteine rich DPF motif domain containing 1)

Identity

Alias (NCBI)C22orf40
HGNC (Hugo) CDPF1
HGNC Alias symbLOC150383
HGNC Previous nameC22orf40
HGNC Previous namechromosome 22 open reading frame 40
 cysteine-rich, DPF motif domain containing 1
 cysteine rich, DPF motif domain containing 1
LocusID (NCBI) 150383
Atlas_Id 61656
Location 22q13.31  [Link to chromosome band 22q13]
Location_base_pair Starts at 46244013 and ends at 46250293 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GRHL2 (8q22.3) / CDPF1 (22q13.31)ZMIZ1 (10q22.3) / CDPF1 (22q13.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)CDPF1   33710
Cards
Entrez_Gene (NCBI)CDPF1    cysteine rich DPF motif domain containing 1
AliasesC22orf40
GeneCards (Weizmann)CDPF1
Ensembl hg19 (Hinxton)ENSG00000205643 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205643 [Gene_View]  ENSG00000205643 [Sequence]  chr22:46244013-46250293 [Contig_View]  CDPF1 [Vega]
ICGC DataPortalENSG00000205643
TCGA cBioPortalCDPF1
AceView (NCBI)CDPF1
Genatlas (Paris)CDPF1
SOURCE (Princeton)CDPF1
Genetics Home Reference (NIH)CDPF1
Genomic and cartography
GoldenPath hg38 (UCSC)CDPF1  -     chr22:46244013-46250293 -  22q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CDPF1  -     22q13.31   [Description]    (hg19-Feb_2009)
GoldenPathCDPF1 - 22q13.31 [CytoView hg19]  CDPF1 - 22q13.31 [CytoView hg38]
ImmunoBaseENSG00000205643
Genome Data Viewer NCBICDPF1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK127072 AW085176 BC036462 BC045796 BC067871
RefSeq transcript (Entrez)NM_001008917 NM_207327
Consensus coding sequences : CCDS (NCBI)CDPF1
Gene ExpressionCDPF1 [ NCBI-GEO ]   CDPF1 [ EBI - ARRAY_EXPRESS ]   CDPF1 [ SEEK ]   CDPF1 [ MEM ]
Gene Expression Viewer (FireBrowse)CDPF1 [ Firebrowse - Broad ]
GenevisibleExpression of CDPF1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)150383
GTEX Portal (Tissue expression)CDPF1
Human Protein AtlasENSG00000205643-CDPF1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NVV7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NVV7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NVV7
PhosPhoSitePlusQ6NVV7
Domains : Interpro (EBI)CDPF1    Cys-rich_DPF   
Domain families : Pfam (Sanger)C6_DPF (PF10170)   
Domain families : Pfam (NCBI)pfam10170   
Conserved Domain (NCBI)CDPF1
SuperfamilyQ6NVV7
AlphaFold pdb e-kbQ6NVV7   
Human Protein Atlas [tissue]ENSG00000205643-CDPF1 [tissue]
HPRD11241
Protein Interaction databases
DIP (DOE-UCLA)Q6NVV7
IntAct (EBI)Q6NVV7
BioGRIDCDPF1
STRING (EMBL)CDPF1
ZODIACCDPF1
Ontologies - Pathways
QuickGOQ6NVV7
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkCDPF1
Atlas of Cancer Signalling NetworkCDPF1
Wikipedia pathwaysCDPF1
Orthology - Evolution
OrthoDB150383
GeneTree (enSembl)ENSG00000205643
Phylogenetic Trees/Animal Genes : TreeFamCDPF1
Homologs : HomoloGeneCDPF1
Homology/Alignments : Family Browser (UCSC)CDPF1
Gene fusions - Rearrangements
Fusion : QuiverCDPF1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDPF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDPF1
dbVarCDPF1
ClinVarCDPF1
MonarchCDPF1
1000_GenomesCDPF1 
Exome Variant ServerCDPF1
GNOMAD BrowserENSG00000205643
Varsome BrowserCDPF1
ACMGCDPF1 variants
VarityQ6NVV7
Genomic Variants (DGV)CDPF1 [DGVbeta]
DECIPHERCDPF1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCDPF1 
Mutations
ICGC Data PortalCDPF1 
TCGA Data PortalCDPF1 
Broad Tumor PortalCDPF1
OASIS PortalCDPF1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCDPF1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCDPF1
Mutations and Diseases : HGMDCDPF1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCDPF1
DgiDB (Drug Gene Interaction Database)CDPF1
DoCM (Curated mutations)CDPF1
CIViC (Clinical Interpretations of Variants in Cancer)CDPF1
Cancer3DCDPF1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCDPF1
MedgenCDPF1
Genetic Testing Registry CDPF1
NextProtQ6NVV7 [Medical]
GENETestsCDPF1
Target ValidationCDPF1
Huge Navigator CDPF1 [HugePedia]
ClinGenCDPF1
Clinical trials, drugs, therapy
MyCancerGenomeCDPF1
Protein Interactions : CTDCDPF1
Pharm GKB GenePA162379006
PharosQ6NVV7
Clinical trialCDPF1
Miscellaneous
canSAR (ICR)CDPF1
HarmonizomeCDPF1
DataMed IndexCDPF1
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCDPF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:45:36 CEST 2021

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