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CDPF1 (cysteine rich DPF motif domain containing 1)

Identity

Alias_namesC22orf40
chromosome 22 open reading frame 40
cysteine-rich, DPF motif domain containing 1
cysteine rich, DPF motif domain containing 1
Alias_symbol (synonym)LOC150383
Other alias
HGNC (Hugo) CDPF1
LocusID (NCBI) 150383
Atlas_Id 61656
Location 22q13.31  [Link to chromosome band 22q13]
Location_base_pair Starts at 46244013 and ends at 46250296 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GRHL2 (8q22.3) / CDPF1 (22q13.31)ZMIZ1 (10q22.3) / CDPF1 (22q13.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CDPF1   33710
Cards
Entrez_Gene (NCBI)CDPF1  150383  cysteine rich DPF motif domain containing 1
AliasesC22orf40
GeneCards (Weizmann)CDPF1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr22:46244013-46250296 [Contig_View]  CDPF1 [Vega]
TCGA cBioPortalCDPF1
AceView (NCBI)CDPF1
Genatlas (Paris)CDPF1
WikiGenes150383
SOURCE (Princeton)CDPF1
Genetics Home Reference (NIH)CDPF1
Genomic and cartography
GoldenPath hg38 (UCSC)CDPF1  -     chr22:46244013-46250296 -  22q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CDPF1  -     22q13.31   [Description]    (hg19-Feb_2009)
EnsemblCDPF1 - 22q13.31 [CytoView hg19]  CDPF1 - 22q13.31 [CytoView hg38]
Mapping of homologs : NCBICDPF1 [Mapview hg19]  CDPF1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK127072 AW085176 BC036462 BC045796 BC067871
RefSeq transcript (Entrez)NM_001008917 NM_207327
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CDPF1
Cluster EST : UnigeneHs.592209 [ NCBI ]
CGAP (NCI)Hs.592209
Gene ExpressionCDPF1 [ NCBI-GEO ]   CDPF1 [ EBI - ARRAY_EXPRESS ]   CDPF1 [ SEEK ]   CDPF1 [ MEM ]
Gene Expression Viewer (FireBrowse)CDPF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)150383
GTEX Portal (Tissue expression)CDPF1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NVV7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NVV7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NVV7
Splice isoforms : SwissVarQ6NVV7
PhosPhoSitePlusQ6NVV7
Domains : Interpro (EBI)Cys-rich_DPF   
Domain families : Pfam (Sanger)C6_DPF (PF10170)   
Domain families : Pfam (NCBI)pfam10170   
Conserved Domain (NCBI)CDPF1
DMDM Disease mutations150383
Blocks (Seattle)CDPF1
SuperfamilyQ6NVV7
Peptide AtlasQ6NVV7
HPRD11241
IPIIPI00086860   IPI00447667   IPI00549527   IPI00878285   IPI00879494   
Protein Interaction databases
DIP (DOE-UCLA)Q6NVV7
IntAct (EBI)Q6NVV7
BioGRIDCDPF1
STRING (EMBL)CDPF1
ZODIACCDPF1
Ontologies - Pathways
QuickGOQ6NVV7
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkCDPF1
Atlas of Cancer Signalling NetworkCDPF1
Wikipedia pathwaysCDPF1
Orthology - Evolution
OrthoDB150383
Phylogenetic Trees/Animal Genes : TreeFamCDPF1
HOVERGENQ6NVV7
HOGENOMQ6NVV7
Homologs : HomoloGeneCDPF1
Homology/Alignments : Family Browser (UCSC)CDPF1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDPF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDPF1
dbVarCDPF1
ClinVarCDPF1
1000_GenomesCDPF1 
Exome Variant ServerCDPF1
ExAC (Exome Aggregation Consortium)CDPF1 (select the gene name)
Genetic variants : HAPMAP150383
Genomic Variants (DGV)CDPF1 [DGVbeta]
DECIPHERCDPF1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCDPF1 
Mutations
ICGC Data PortalCDPF1 
TCGA Data PortalCDPF1 
Broad Tumor PortalCDPF1
OASIS PortalCDPF1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCDPF1
BioMutasearch CDPF1
DgiDB (Drug Gene Interaction Database)CDPF1
DoCM (Curated mutations)CDPF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CDPF1 (select a term)
intoGenCDPF1
Cancer3DCDPF1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCDPF1
Genetic Testing Registry CDPF1
NextProtQ6NVV7 [Medical]
TSGene150383
GENETestsCDPF1
Target ValidationCDPF1
Huge Navigator CDPF1 [HugePedia]
snp3D : Map Gene to Disease150383
BioCentury BCIQCDPF1
ClinGenCDPF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD150383
Chemical/Pharm GKB GenePA162379006
Clinical trialCDPF1
Miscellaneous
canSAR (ICR)CDPF1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCDPF1
EVEXCDPF1
GoPubMedCDPF1
iHOPCDPF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:43:00 CEST 2017

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