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CDR1 (cerebellar degeneration related protein 1)

Identity

Alias (NCBI)CDR
CDR34
CDR62A
HGNC (Hugo) CDR1
HGNC Alias symbCDR62A
CDR34
HGNC Alias nameCerebellar degeneration-related protein-1 (34kD)
HGNC Previous nameCDR
HGNC Previous namecerebellar degeneration-related protein (34kD)
 cerebellar degeneration-related protein 1, 34kDa
LocusID (NCBI) 1038
Atlas_Id 57905
Location Xq27.1  [Link to chromosome band Xq27]
Location_base_pair Starts at 140783260 and ends at 140784558 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CDR1 (Xq27.1)::AIF1L (9q34.12)EEF1B2 (2q33.3)::CDR1 (Xq27.1)RUNX1 (21q22.12)::CDR1 (Xq27.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)CDR1   1798
Cards
Entrez_Gene (NCBI)CDR1    cerebellar degeneration related protein 1
AliasesCDR; CDR34; CDR62A
GeneCards (Weizmann)CDR1
Ensembl hg19 (Hinxton)ENSG00000288642 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000288642 [Gene_View]  ENSG00000288642 [Sequence]  chrX:140783260-140784558 [Contig_View]  CDR1 [Vega]
ICGC DataPortalENSG00000288642
TCGA cBioPortalCDR1
AceView (NCBI)CDR1
Genatlas (Paris)CDR1
SOURCE (Princeton)CDR1
Genetics Home Reference (NIH)CDR1
Genomic and cartography
GoldenPath hg38 (UCSC)CDR1  -     chrX:140783260-140784558 -  Xq27.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CDR1  -     Xq27.1   [Description]    (hg19-Feb_2009)
GoldenPathCDR1 - Xq27.1 [CytoView hg19]  CDR1 - Xq27.1 [CytoView hg38]
ImmunoBaseENSG00000288642
Genome Data Viewer NCBICDR1 [Mapview hg19]  
OMIM302650   
Gene and transcription
Genbank (Entrez)BC113472 BC113474 H98878 M16965 N79390
RefSeq transcript (Entrez)NM_004065
Consensus coding sequences : CCDS (NCBI)CDR1
Gene ExpressionCDR1 [ NCBI-GEO ]   CDR1 [ EBI - ARRAY_EXPRESS ]   CDR1 [ SEEK ]   CDR1 [ MEM ]
Gene Expression Viewer (FireBrowse)CDR1 [ Firebrowse - Broad ]
GenevisibleExpression of CDR1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1038
GTEX Portal (Tissue expression)CDR1
Human Protein AtlasENSG00000288642-CDR1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP51861   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP51861  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP51861
PhosPhoSitePlusP51861
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CDR1
SuperfamilyP51861
AlphaFold pdb e-kbP51861   
Human Protein Atlas [tissue]ENSG00000288642-CDR1 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)P51861
IntAct (EBI)P51861
BioGRIDCDR1
STRING (EMBL)CDR1
ZODIACCDR1
Ontologies - Pathways
QuickGOP51861
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkCDR1
Atlas of Cancer Signalling NetworkCDR1
Wikipedia pathwaysCDR1
Orthology - Evolution
OrthoDB1038
GeneTree (enSembl)ENSG00000288642
Phylogenetic Trees/Animal Genes : TreeFamCDR1
Homologs : HomoloGeneCDR1
Homology/Alignments : Family Browser (UCSC)CDR1
Gene fusions - Rearrangements
Fusion : QuiverCDR1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDR1
dbVarCDR1
ClinVarCDR1
MonarchCDR1
1000_GenomesCDR1 
Exome Variant ServerCDR1
GNOMAD BrowserENSG00000288642
Varsome BrowserCDR1
ACMGCDR1 variants
VarityP51861
Genomic Variants (DGV)CDR1 [DGVbeta]
DECIPHERCDR1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCDR1 
Mutations
ICGC Data PortalCDR1 
TCGA Data PortalCDR1 
Broad Tumor PortalCDR1
OASIS PortalCDR1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCDR1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCDR1
Mutations and Diseases : HGMDCDR1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCDR1
DgiDB (Drug Gene Interaction Database)CDR1
DoCM (Curated mutations)CDR1
CIViC (Clinical Interpretations of Variants in Cancer)CDR1
Cancer3DCDR1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM302650   
Orphanet
DisGeNETCDR1
MedgenCDR1
Genetic Testing Registry CDR1
NextProtP51861 [Medical]
GENETestsCDR1
Target ValidationCDR1
Huge Navigator CDR1 [HugePedia]
ClinGenCDR1
Clinical trials, drugs, therapy
MyCancerGenomeCDR1
Protein Interactions : CTDCDR1
Pharm GKB GenePA26330
PharosP51861
Clinical trialCDR1
Miscellaneous
canSAR (ICR)CDR1
HarmonizomeCDR1
ARCHS4CDR1
DataMed IndexCDR1
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCDR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jan 20 12:26:54 CET 2022

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