Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CDR1 (cerebellar degeneration related protein 1)

Identity

Alias_namesCDR
cerebellar degeneration-related protein (34kD)
cerebellar degeneration-related protein 1, 34kDa
Alias_symbol (synonym)CDR62A
CDR34
Other alias
HGNC (Hugo) CDR1
LocusID (NCBI) 1038
Atlas_Id 61657
Location Xq27.1  [Link to chromosome band Xq27]
Location_base_pair Starts at 140783260 and ends at 140784558 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CDR1 (Xq27.1) / AIF1L (9q34.12)EEF1B2 (2q33.3) / CDR1 (Xq27.1)RUNX1 (21q22.12) / CDR1 (Xq27.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CDR1   1798
Cards
Entrez_Gene (NCBI)CDR1  1038  cerebellar degeneration related protein 1
AliasesCDR; CDR34; CDR62A
GeneCards (Weizmann)CDR1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chrX:140783260-140784558 [Contig_View]  CDR1 [Vega]
TCGA cBioPortalCDR1
AceView (NCBI)CDR1
Genatlas (Paris)CDR1
WikiGenes1038
SOURCE (Princeton)CDR1
Genetics Home Reference (NIH)CDR1
Genomic and cartography
GoldenPath hg38 (UCSC)CDR1  -     chrX:140783260-140784558 -  Xq27.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CDR1  -     Xq27.1   [Description]    (hg19-Feb_2009)
EnsemblCDR1 - Xq27.1 [CytoView hg19]  CDR1 - Xq27.1 [CytoView hg38]
Mapping of homologs : NCBICDR1 [Mapview hg19]  CDR1 [Mapview hg38]
OMIM302650   
Gene and transcription
Genbank (Entrez)BC113472 BC113474 H98878 M16965 N79390
RefSeq transcript (Entrez)NM_004065
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CDR1
Cluster EST : UnigeneHs.446675 [ NCBI ]
CGAP (NCI)Hs.446675
Gene ExpressionCDR1 [ NCBI-GEO ]   CDR1 [ EBI - ARRAY_EXPRESS ]   CDR1 [ SEEK ]   CDR1 [ MEM ]
Gene Expression Viewer (FireBrowse)CDR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1038
GTEX Portal (Tissue expression)CDR1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP51861   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP51861  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP51861
Splice isoforms : SwissVarP51861
PhosPhoSitePlusP51861
Domains : Interpro (EBI)CDR1   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CDR1
DMDM Disease mutations1038
Blocks (Seattle)CDR1
SuperfamilyP51861
Peptide AtlasP51861
HPRD02361
IPIIPI00020963   
Protein Interaction databases
DIP (DOE-UCLA)P51861
IntAct (EBI)P51861
BioGRIDCDR1
STRING (EMBL)CDR1
ZODIACCDR1
Ontologies - Pathways
QuickGOP51861
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkCDR1
Atlas of Cancer Signalling NetworkCDR1
Wikipedia pathwaysCDR1
Orthology - Evolution
OrthoDB1038
Phylogenetic Trees/Animal Genes : TreeFamCDR1
HOVERGENP51861
HOGENOMP51861
Homologs : HomoloGeneCDR1
Homology/Alignments : Family Browser (UCSC)CDR1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDR1
dbVarCDR1
ClinVarCDR1
1000_GenomesCDR1 
Exome Variant ServerCDR1
ExAC (Exome Aggregation Consortium)CDR1 (select the gene name)
Genetic variants : HAPMAP1038
Genomic Variants (DGV)CDR1 [DGVbeta]
DECIPHERCDR1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCDR1 
Mutations
ICGC Data PortalCDR1 
TCGA Data PortalCDR1 
Broad Tumor PortalCDR1
OASIS PortalCDR1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCDR1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCDR1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch CDR1
DgiDB (Drug Gene Interaction Database)CDR1
DoCM (Curated mutations)CDR1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CDR1 (select a term)
intoGenCDR1
Cancer3DCDR1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM302650   
Orphanet
MedgenCDR1
Genetic Testing Registry CDR1
NextProtP51861 [Medical]
TSGene1038
GENETestsCDR1
Target ValidationCDR1
Huge Navigator CDR1 [HugePedia]
snp3D : Map Gene to Disease1038
BioCentury BCIQCDR1
ClinGenCDR1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1038
Chemical/Pharm GKB GenePA26330
Clinical trialCDR1
Miscellaneous
canSAR (ICR)CDR1 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCDR1
EVEXCDR1
GoPubMedCDR1
iHOPCDR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:43:00 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.