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CDR2 (cerebellar degeneration related protein 2)

Identity

Alias_namescerebellar degeneration-related protein (62kD)
cerebellar degeneration-related protein 2, 62kDa
Alias_symbol (synonym)CDR62
Yo
Other alias
HGNC (Hugo) CDR2
LocusID (NCBI) 1039
Atlas_Id 46428
Location 16p12.2  [Link to chromosome band 16p12]
Location_base_pair Starts at 22345936 and ends at 22374617 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CSGALNACT2 (10q11.21) / CDR2 (16p12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CDR2   1799
Cards
Entrez_Gene (NCBI)CDR2  1039  cerebellar degeneration related protein 2
AliasesCDR62; Yo
GeneCards (Weizmann)CDR2
Ensembl hg19 (Hinxton)ENSG00000140743 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000140743 [Gene_View]  chr16:22345936-22374617 [Contig_View]  CDR2 [Vega]
ICGC DataPortalENSG00000140743
TCGA cBioPortalCDR2
AceView (NCBI)CDR2
Genatlas (Paris)CDR2
WikiGenes1039
SOURCE (Princeton)CDR2
Genetics Home Reference (NIH)CDR2
Genomic and cartography
GoldenPath hg38 (UCSC)CDR2  -     chr16:22345936-22374617 -  16p12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CDR2  -     16p12.2   [Description]    (hg19-Feb_2009)
EnsemblCDR2 - 16p12.2 [CytoView hg19]  CDR2 - 16p12.2 [CytoView hg38]
Mapping of homologs : NCBICDR2 [Mapview hg19]  CDR2 [Mapview hg38]
OMIM117340   
Gene and transcription
Genbank (Entrez)AK292273 BC017503 BG386156 BG750955 BM714067
RefSeq transcript (Entrez)NM_001802
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CDR2
Cluster EST : UnigeneHs.513430 [ NCBI ]
CGAP (NCI)Hs.513430
Alternative Splicing GalleryENSG00000140743
Gene ExpressionCDR2 [ NCBI-GEO ]   CDR2 [ EBI - ARRAY_EXPRESS ]   CDR2 [ SEEK ]   CDR2 [ MEM ]
Gene Expression Viewer (FireBrowse)CDR2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1039
GTEX Portal (Tissue expression)CDR2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ01850   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ01850  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ01850
Splice isoforms : SwissVarQ01850
PhosPhoSitePlusQ01850
Domains : Interpro (EBI)CDR2   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CDR2
DMDM Disease mutations1039
Blocks (Seattle)CDR2
SuperfamilyQ01850
Human Protein AtlasENSG00000140743
Peptide AtlasQ01850
HPRD06681
IPIIPI00009862   
Protein Interaction databases
DIP (DOE-UCLA)Q01850
IntAct (EBI)Q01850
FunCoupENSG00000140743
BioGRIDCDR2
STRING (EMBL)CDR2
ZODIACCDR2
Ontologies - Pathways
QuickGOQ01850
Ontology : AmiGOmolecular_function  protein binding  cytoplasm  
Ontology : EGO-EBImolecular_function  protein binding  cytoplasm  
NDEx NetworkCDR2
Atlas of Cancer Signalling NetworkCDR2
Wikipedia pathwaysCDR2
Orthology - Evolution
OrthoDB1039
GeneTree (enSembl)ENSG00000140743
Phylogenetic Trees/Animal Genes : TreeFamCDR2
HOVERGENQ01850
HOGENOMQ01850
Homologs : HomoloGeneCDR2
Homology/Alignments : Family Browser (UCSC)CDR2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDR2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDR2
dbVarCDR2
ClinVarCDR2
1000_GenomesCDR2 
Exome Variant ServerCDR2
ExAC (Exome Aggregation Consortium)CDR2 (select the gene name)
Genetic variants : HAPMAP1039
Genomic Variants (DGV)CDR2 [DGVbeta]
DECIPHERCDR2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCDR2 
Mutations
ICGC Data PortalCDR2 
TCGA Data PortalCDR2 
Broad Tumor PortalCDR2
OASIS PortalCDR2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCDR2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCDR2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CDR2
DgiDB (Drug Gene Interaction Database)CDR2
DoCM (Curated mutations)CDR2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CDR2 (select a term)
intoGenCDR2
Cancer3DCDR2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM117340   
Orphanet
MedgenCDR2
Genetic Testing Registry CDR2
NextProtQ01850 [Medical]
TSGene1039
GENETestsCDR2
Huge Navigator CDR2 [HugePedia]
snp3D : Map Gene to Disease1039
BioCentury BCIQCDR2
ClinGenCDR2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1039
Chemical/Pharm GKB GenePA26331
Clinical trialCDR2
Miscellaneous
canSAR (ICR)CDR2 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCDR2
EVEXCDR2
GoPubMedCDR2
iHOPCDR2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:10:04 CEST 2017

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