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CDR2 (cerebellar degeneration related protein 2)

Identity

Alias (NCBI)CDR62
Yo
HGNC (Hugo) CDR2
HGNC Alias symbCDR62
Yo
HGNC Alias nameYo paraneoplastic antigen
HGNC Previous namecerebellar degeneration-related protein (62kD)
 cerebellar degeneration-related protein 2, 62kDa
LocusID (NCBI) 1039
Atlas_Id 46428
Location 16p12.2  [Link to chromosome band 16p12]
Location_base_pair Starts at 22345936 and ends at 22374619 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CSGALNACT2 (10q11.21) / CDR2 (16p12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)CDR2   1799
Cards
Entrez_Gene (NCBI)CDR2    cerebellar degeneration related protein 2
AliasesCDR62; Yo
GeneCards (Weizmann)CDR2
Ensembl hg19 (Hinxton)ENSG00000140743 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000140743 [Gene_View]  ENSG00000140743 [Sequence]  chr16:22345936-22374619 [Contig_View]  CDR2 [Vega]
ICGC DataPortalENSG00000140743
TCGA cBioPortalCDR2
AceView (NCBI)CDR2
Genatlas (Paris)CDR2
SOURCE (Princeton)CDR2
Genetics Home Reference (NIH)CDR2
Genomic and cartography
GoldenPath hg38 (UCSC)CDR2  -     chr16:22345936-22374619 -  16p12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CDR2  -     16p12.2   [Description]    (hg19-Feb_2009)
GoldenPathCDR2 - 16p12.2 [CytoView hg19]  CDR2 - 16p12.2 [CytoView hg38]
ImmunoBaseENSG00000140743
Genome Data Viewer NCBICDR2 [Mapview hg19]  
OMIM117340   
Gene and transcription
Genbank (Entrez)AK292273 BC017503 BG386156 BG750955 BM714067
RefSeq transcript (Entrez)NM_001802
Consensus coding sequences : CCDS (NCBI)CDR2
Gene ExpressionCDR2 [ NCBI-GEO ]   CDR2 [ EBI - ARRAY_EXPRESS ]   CDR2 [ SEEK ]   CDR2 [ MEM ]
Gene Expression Viewer (FireBrowse)CDR2 [ Firebrowse - Broad ]
GenevisibleExpression of CDR2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1039
GTEX Portal (Tissue expression)CDR2
Human Protein AtlasENSG00000140743-CDR2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ01850   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ01850  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ01850
PhosPhoSitePlusQ01850
Domains : Interpro (EBI)CDR2   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CDR2
SuperfamilyQ01850
AlphaFold pdb e-kbQ01850   
Human Protein Atlas [tissue]ENSG00000140743-CDR2 [tissue]
HPRD06681
Protein Interaction databases
DIP (DOE-UCLA)Q01850
IntAct (EBI)Q01850
BioGRIDCDR2
STRING (EMBL)CDR2
ZODIACCDR2
Ontologies - Pathways
QuickGOQ01850
Ontology : AmiGOmolecular_function  protein binding  
Ontology : EGO-EBImolecular_function  protein binding  
NDEx NetworkCDR2
Atlas of Cancer Signalling NetworkCDR2
Wikipedia pathwaysCDR2
Orthology - Evolution
OrthoDB1039
GeneTree (enSembl)ENSG00000140743
Phylogenetic Trees/Animal Genes : TreeFamCDR2
Homologs : HomoloGeneCDR2
Homology/Alignments : Family Browser (UCSC)CDR2
Gene fusions - Rearrangements
Fusion : QuiverCDR2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDR2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDR2
dbVarCDR2
ClinVarCDR2
MonarchCDR2
1000_GenomesCDR2 
Exome Variant ServerCDR2
GNOMAD BrowserENSG00000140743
Varsome BrowserCDR2
ACMGCDR2 variants
VarityQ01850
Genomic Variants (DGV)CDR2 [DGVbeta]
DECIPHERCDR2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCDR2 
Mutations
ICGC Data PortalCDR2 
TCGA Data PortalCDR2 
Broad Tumor PortalCDR2
OASIS PortalCDR2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCDR2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCDR2
Mutations and Diseases : HGMDCDR2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCDR2
DgiDB (Drug Gene Interaction Database)CDR2
DoCM (Curated mutations)CDR2
CIViC (Clinical Interpretations of Variants in Cancer)CDR2
Cancer3DCDR2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM117340   
Orphanet
DisGeNETCDR2
MedgenCDR2
Genetic Testing Registry CDR2
NextProtQ01850 [Medical]
GENETestsCDR2
Target ValidationCDR2
Huge Navigator CDR2 [HugePedia]
ClinGenCDR2
Clinical trials, drugs, therapy
MyCancerGenomeCDR2
Protein Interactions : CTDCDR2
Pharm GKB GenePA26331
PharosQ01850
Clinical trialCDR2
Miscellaneous
canSAR (ICR)CDR2
HarmonizomeCDR2
DataMed IndexCDR2
Probes
Litterature
PubMed40 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCDR2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:03:23 CEST 2021

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