Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CDR2L (cerebellar degeneration related protein 2 like)

Identity

Other aliasHUMPPA
HGNC (Hugo) CDR2L
LocusID (NCBI) 30850
Atlas_Id 57237
Location 17q25.1  [Link to chromosome band 17q25]
Location_base_pair Starts at 74987632 and ends at 75004284 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CDR2L (17q25.1) / ICT1 (17q25.1)CDR2L (17q25.1) / KSR1 (17q11.1)CDR2L (17q25.1) / PEPD (19q13.11)
COIL (17q22) / CDR2L (17q25.1)MED14 (Xp11.4) / CDR2L (17q25.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CDR2L   29999
Cards
Entrez_Gene (NCBI)CDR2L  30850  cerebellar degeneration related protein 2 like
AliasesHUMPPA
GeneCards (Weizmann)CDR2L
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:74987632-75004284 [Contig_View]  CDR2L [Vega]
TCGA cBioPortalCDR2L
AceView (NCBI)CDR2L
Genatlas (Paris)CDR2L
WikiGenes30850
SOURCE (Princeton)CDR2L
Genetics Home Reference (NIH)CDR2L
Genomic and cartography
GoldenPath hg38 (UCSC)CDR2L  -     chr17:74987632-75004284 +  17q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CDR2L  -     17q25.1   [Description]    (hg19-Feb_2009)
EnsemblCDR2L - 17q25.1 [CytoView hg19]  CDR2L - 17q25.1 [CytoView hg38]
Mapping of homologs : NCBICDR2L [Mapview hg19]  CDR2L [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK294006 AW239343 BC013105 BC047534 CR749715
RefSeq transcript (Entrez)NM_014603
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CDR2L
Cluster EST : UnigeneHs.78358 [ NCBI ]
CGAP (NCI)Hs.78358
Gene ExpressionCDR2L [ NCBI-GEO ]   CDR2L [ EBI - ARRAY_EXPRESS ]   CDR2L [ SEEK ]   CDR2L [ MEM ]
Gene Expression Viewer (FireBrowse)CDR2L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)30850
GTEX Portal (Tissue expression)CDR2L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86X02   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86X02  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86X02
Splice isoforms : SwissVarQ86X02
PhosPhoSitePlusQ86X02
Domains : Interpro (EBI)CDR2   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CDR2L
DMDM Disease mutations30850
Blocks (Seattle)CDR2L
SuperfamilyQ86X02
Peptide AtlasQ86X02
IPIIPI00395950   
Protein Interaction databases
DIP (DOE-UCLA)Q86X02
IntAct (EBI)Q86X02
BioGRIDCDR2L
STRING (EMBL)CDR2L
ZODIACCDR2L
Ontologies - Pathways
QuickGOQ86X02
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkCDR2L
Atlas of Cancer Signalling NetworkCDR2L
Wikipedia pathwaysCDR2L
Orthology - Evolution
OrthoDB30850
Phylogenetic Trees/Animal Genes : TreeFamCDR2L
HOVERGENQ86X02
HOGENOMQ86X02
Homologs : HomoloGeneCDR2L
Homology/Alignments : Family Browser (UCSC)CDR2L
Gene fusions - Rearrangements
Tumor Fusion PortalCDR2L
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDR2L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDR2L
dbVarCDR2L
ClinVarCDR2L
1000_GenomesCDR2L 
Exome Variant ServerCDR2L
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP30850
Genomic Variants (DGV)CDR2L [DGVbeta]
DECIPHERCDR2L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCDR2L 
Mutations
ICGC Data PortalCDR2L 
TCGA Data PortalCDR2L 
Broad Tumor PortalCDR2L
OASIS PortalCDR2L [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCDR2L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CDR2L
DgiDB (Drug Gene Interaction Database)CDR2L
DoCM (Curated mutations)CDR2L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CDR2L (select a term)
intoGenCDR2L
Cancer3DCDR2L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCDR2L
MedgenCDR2L
Genetic Testing Registry CDR2L
NextProtQ86X02 [Medical]
TSGene30850
GENETestsCDR2L
Target ValidationCDR2L
Huge Navigator CDR2L [HugePedia]
snp3D : Map Gene to Disease30850
BioCentury BCIQCDR2L
ClinGenCDR2L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD30850
Chemical/Pharm GKB GenePA142672137
Clinical trialCDR2L
Miscellaneous
canSAR (ICR)CDR2L (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCDR2L
EVEXCDR2L
GoPubMedCDR2L
iHOPCDR2L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:07:11 CET 2017

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