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CDR2L (cerebellar degeneration related protein 2 like)

Identity

Alias (NCBI)HUMPPA
HGNC (Hugo) CDR2L
HGNC Alias symbHUMPPA
HGNC Alias nameparaneoplastic antigen
HGNC Previous namecerebellar degeneration-related protein 2-like
LocusID (NCBI) 30850
Atlas_Id 57237
Location 17q25.1  [Link to chromosome band 17q25]
Location_base_pair Starts at 74987632 and ends at 75005797 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CDR2L (17q25.1) / ICT1 (17q25.1)CDR2L (17q25.1) / KSR1 (17q11.1)CDR2L (17q25.1) / PEPD (19q13.11)
COIL (17q22) / CDR2L (17q25.1)MED14 (Xp11.4) / CDR2L (17q25.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)CDR2L   29999
Cards
Entrez_Gene (NCBI)CDR2L    cerebellar degeneration related protein 2 like
AliasesHUMPPA
GeneCards (Weizmann)CDR2L
Ensembl hg19 (Hinxton)ENSG00000109089 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000109089 [Gene_View]  ENSG00000109089 [Sequence]  chr17:74987632-75005797 [Contig_View]  CDR2L [Vega]
ICGC DataPortalENSG00000109089
TCGA cBioPortalCDR2L
AceView (NCBI)CDR2L
Genatlas (Paris)CDR2L
SOURCE (Princeton)CDR2L
Genetics Home Reference (NIH)CDR2L
Genomic and cartography
GoldenPath hg38 (UCSC)CDR2L  -     chr17:74987632-75005797 +  17q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CDR2L  -     17q25.1   [Description]    (hg19-Feb_2009)
GoldenPathCDR2L - 17q25.1 [CytoView hg19]  CDR2L - 17q25.1 [CytoView hg38]
ImmunoBaseENSG00000109089
Genome Data Viewer NCBICDR2L [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK294006 AW239343 BC013105 BC047534 CR749715
RefSeq transcript (Entrez)NM_014603
Consensus coding sequences : CCDS (NCBI)CDR2L
Gene ExpressionCDR2L [ NCBI-GEO ]   CDR2L [ EBI - ARRAY_EXPRESS ]   CDR2L [ SEEK ]   CDR2L [ MEM ]
Gene Expression Viewer (FireBrowse)CDR2L [ Firebrowse - Broad ]
GenevisibleExpression of CDR2L in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)30850
GTEX Portal (Tissue expression)CDR2L
Human Protein AtlasENSG00000109089-CDR2L [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86X02   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86X02  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86X02
PhosPhoSitePlusQ86X02
Domains : Interpro (EBI)CDR2   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CDR2L
SuperfamilyQ86X02
AlphaFold pdb e-kbQ86X02   
Human Protein Atlas [tissue]ENSG00000109089-CDR2L [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q86X02
IntAct (EBI)Q86X02
BioGRIDCDR2L
STRING (EMBL)CDR2L
ZODIACCDR2L
Ontologies - Pathways
QuickGOQ86X02
Ontology : AmiGOprotein binding  identical protein binding  
Ontology : EGO-EBIprotein binding  identical protein binding  
NDEx NetworkCDR2L
Atlas of Cancer Signalling NetworkCDR2L
Wikipedia pathwaysCDR2L
Orthology - Evolution
OrthoDB30850
GeneTree (enSembl)ENSG00000109089
Phylogenetic Trees/Animal Genes : TreeFamCDR2L
Homologs : HomoloGeneCDR2L
Homology/Alignments : Family Browser (UCSC)CDR2L
Gene fusions - Rearrangements
Fusion : QuiverCDR2L
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDR2L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDR2L
dbVarCDR2L
ClinVarCDR2L
MonarchCDR2L
1000_GenomesCDR2L 
Exome Variant ServerCDR2L
GNOMAD BrowserENSG00000109089
Varsome BrowserCDR2L
ACMGCDR2L variants
VarityQ86X02
Genomic Variants (DGV)CDR2L [DGVbeta]
DECIPHERCDR2L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCDR2L 
Mutations
ICGC Data PortalCDR2L 
TCGA Data PortalCDR2L 
Broad Tumor PortalCDR2L
OASIS PortalCDR2L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCDR2L  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCDR2L
Mutations and Diseases : HGMDCDR2L
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCDR2L
DgiDB (Drug Gene Interaction Database)CDR2L
DoCM (Curated mutations)CDR2L
CIViC (Clinical Interpretations of Variants in Cancer)CDR2L
Cancer3DCDR2L
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCDR2L
MedgenCDR2L
Genetic Testing Registry CDR2L
NextProtQ86X02 [Medical]
GENETestsCDR2L
Target ValidationCDR2L
Huge Navigator CDR2L [HugePedia]
ClinGenCDR2L
Clinical trials, drugs, therapy
MyCancerGenomeCDR2L
Protein Interactions : CTDCDR2L
Pharm GKB GenePA142672137
PharosQ86X02
Clinical trialCDR2L
Miscellaneous
canSAR (ICR)CDR2L
HarmonizomeCDR2L
DataMed IndexCDR2L
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCDR2L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:03:24 CEST 2021

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