Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CDRT1 (CMT1A duplicated region transcript 1)

Identity

Alias_namesFBXW10P1
F-box and WD repeat domain containing 10 pseudogene 1
F-box and WD-40 domain protein 10 pseudogene 1
Alias_symbol (synonym)HREP
SM25H2
FBXW10B
Other aliasC170RF1
C17ORF1
C17ORF1A
HGNC (Hugo) CDRT1
LocusID (NCBI) 374286
Atlas_Id 61660
Location 17p12  [Link to chromosome band 17p12]
Location_base_pair Starts at 15565482 and ends at 15619704 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CDRT1   14379
Cards
Entrez_Gene (NCBI)CDRT1  374286  CMT1A duplicated region transcript 1
AliasesC170RF1; C17ORF1; C17ORF1A; FBXW10B; 
FBXW10P1; HREP; SM25H2
GeneCards (Weizmann)CDRT1
Ensembl hg19 (Hinxton)ENSG00000241322 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000241322 [Gene_View]  chr17:15565482-15619704 [Contig_View]  CDRT1 [Vega]
ICGC DataPortalENSG00000241322
TCGA cBioPortalCDRT1
AceView (NCBI)CDRT1
Genatlas (Paris)CDRT1
WikiGenes374286
SOURCE (Princeton)CDRT1
Genetics Home Reference (NIH)CDRT1
Genomic and cartography
GoldenPath hg38 (UCSC)CDRT1  -     chr17:15565482-15619704 -  17p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CDRT1  -     17p12   [Description]    (hg19-Feb_2009)
EnsemblCDRT1 - 17p12 [CytoView hg19]  CDRT1 - 17p12 [CytoView hg38]
Mapping of homologs : NCBICDRT1 [Mapview hg19]  CDRT1 [Mapview hg38]
OMIM604596   
Gene and transcription
Genbank (Entrez)AF337810 AK057407 AW891009 BC143291 BC171723
RefSeq transcript (Entrez)NM_001282540 NM_006382
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CDRT1
Cluster EST : UnigeneHs.632233 [ NCBI ]
CGAP (NCI)Hs.632233
Alternative Splicing GalleryENSG00000241322
Gene ExpressionCDRT1 [ NCBI-GEO ]   CDRT1 [ EBI - ARRAY_EXPRESS ]   CDRT1 [ SEEK ]   CDRT1 [ MEM ]
Gene Expression Viewer (FireBrowse)CDRT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)374286
GTEX Portal (Tissue expression)CDRT1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95170   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95170  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95170
Splice isoforms : SwissVarO95170
PhosPhoSitePlusO95170
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)F-box_dom    G-protein_beta_WD-40_rep    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom   
Domain families : Pfam (Sanger)WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)CDRT1
DMDM Disease mutations374286
Blocks (Seattle)CDRT1
SuperfamilyO95170
Human Protein AtlasENSG00000241322
Peptide AtlasO95170
HPRD16699
IPIIPI00815659   IPI00074984   IPI00796531   IPI00965438   
Protein Interaction databases
DIP (DOE-UCLA)O95170
IntAct (EBI)O95170
FunCoupENSG00000241322
BioGRIDCDRT1
STRING (EMBL)CDRT1
ZODIACCDRT1
Ontologies - Pathways
QuickGOO95170
Ontology : AmiGOmolecular_function  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  
NDEx NetworkCDRT1
Atlas of Cancer Signalling NetworkCDRT1
Wikipedia pathwaysCDRT1
Orthology - Evolution
OrthoDB374286
GeneTree (enSembl)ENSG00000241322
Phylogenetic Trees/Animal Genes : TreeFamCDRT1
HOVERGENO95170
HOGENOMO95170
Homologs : HomoloGeneCDRT1
Homology/Alignments : Family Browser (UCSC)CDRT1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDRT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDRT1
dbVarCDRT1
ClinVarCDRT1
1000_GenomesCDRT1 
Exome Variant ServerCDRT1
ExAC (Exome Aggregation Consortium)CDRT1 (select the gene name)
Genetic variants : HAPMAP374286
Genomic Variants (DGV)CDRT1 [DGVbeta]
DECIPHERCDRT1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCDRT1 
Mutations
ICGC Data PortalCDRT1 
TCGA Data PortalCDRT1 
Broad Tumor PortalCDRT1
OASIS PortalCDRT1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCDRT1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCDRT1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CDRT1
DgiDB (Drug Gene Interaction Database)CDRT1
DoCM (Curated mutations)CDRT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CDRT1 (select a term)
intoGenCDRT1
Cancer3DCDRT1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604596   
Orphanet
MedgenCDRT1
Genetic Testing Registry CDRT1
NextProtO95170 [Medical]
TSGene374286
GENETestsCDRT1
Target ValidationCDRT1
Huge Navigator CDRT1 [HugePedia]
snp3D : Map Gene to Disease374286
BioCentury BCIQCDRT1
ClinGenCDRT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD374286
Chemical/Pharm GKB GenePA134869447
Clinical trialCDRT1
Miscellaneous
canSAR (ICR)CDRT1 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCDRT1
EVEXCDRT1
GoPubMedCDRT1
iHOPCDRT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:43:01 CEST 2017

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