Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CDRT15 (CMT1A duplicated region transcript 15)

Identity

Other alias-
HGNC (Hugo) CDRT15
LocusID (NCBI) 146822
Atlas_Id 61661
Location 17p12  [Link to chromosome band 17p12]
Location_base_pair Starts at 14235673 and ends at 14236862 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CDRT15   14395
Cards
Entrez_Gene (NCBI)CDRT15  146822  CMT1A duplicated region transcript 15
Aliases
GeneCards (Weizmann)CDRT15
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:14235673-14236862 [Contig_View]  CDRT15 [Vega]
TCGA cBioPortalCDRT15
AceView (NCBI)CDRT15
Genatlas (Paris)CDRT15
WikiGenes146822
SOURCE (Princeton)CDRT15
Genetics Home Reference (NIH)CDRT15
Genomic and cartography
GoldenPath hg38 (UCSC)CDRT15  -     chr17:14235673-14236862 -  17p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CDRT15  -     17p12   [Description]    (hg19-Feb_2009)
EnsemblCDRT15 - 17p12 [CytoView hg19]  CDRT15 - 17p12 [CytoView hg38]
Mapping of homologs : NCBICDRT15 [Mapview hg19]  CDRT15 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA854007 BC071823 BC146859 HY197844
RefSeq transcript (Entrez)NM_001007530 NM_001348781
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CDRT15
Cluster EST : UnigeneHs.735172 [ NCBI ]
CGAP (NCI)Hs.735172
Gene ExpressionCDRT15 [ NCBI-GEO ]   CDRT15 [ EBI - ARRAY_EXPRESS ]   CDRT15 [ SEEK ]   CDRT15 [ MEM ]
Gene Expression Viewer (FireBrowse)CDRT15 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)146822
GTEX Portal (Tissue expression)CDRT15
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96T59   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96T59  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96T59
Splice isoforms : SwissVarQ96T59
PhosPhoSitePlusQ96T59
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CDRT15
DMDM Disease mutations146822
Blocks (Seattle)CDRT15
SuperfamilyQ96T59
Peptide AtlasQ96T59
HPRD16700
IPIIPI00045915   IPI00797371   
Protein Interaction databases
DIP (DOE-UCLA)Q96T59
IntAct (EBI)Q96T59
BioGRIDCDRT15
STRING (EMBL)CDRT15
ZODIACCDRT15
Ontologies - Pathways
QuickGOQ96T59
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCDRT15
Atlas of Cancer Signalling NetworkCDRT15
Wikipedia pathwaysCDRT15
Orthology - Evolution
OrthoDB146822
Phylogenetic Trees/Animal Genes : TreeFamCDRT15
HOVERGENQ96T59
HOGENOMQ96T59
Homologs : HomoloGeneCDRT15
Homology/Alignments : Family Browser (UCSC)CDRT15
Gene fusions - Rearrangements
Tumor Fusion PortalCDRT15
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDRT15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDRT15
dbVarCDRT15
ClinVarCDRT15
1000_GenomesCDRT15 
Exome Variant ServerCDRT15
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP146822
Genomic Variants (DGV)CDRT15 [DGVbeta]
DECIPHERCDRT15 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCDRT15 
Mutations
ICGC Data PortalCDRT15 
TCGA Data PortalCDRT15 
Broad Tumor PortalCDRT15
OASIS PortalCDRT15 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCDRT15  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCDRT15
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CDRT15
DgiDB (Drug Gene Interaction Database)CDRT15
DoCM (Curated mutations)CDRT15 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CDRT15 (select a term)
intoGenCDRT15
Cancer3DCDRT15(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCDRT15
MedgenCDRT15
Genetic Testing Registry CDRT15
NextProtQ96T59 [Medical]
TSGene146822
GENETestsCDRT15
Target ValidationCDRT15
Huge Navigator CDRT15 [HugePedia]
snp3D : Map Gene to Disease146822
BioCentury BCIQCDRT15
ClinGenCDRT15
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD146822
Chemical/Pharm GKB GenePA26337
Clinical trialCDRT15
Miscellaneous
canSAR (ICR)CDRT15 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCDRT15
EVEXCDRT15
GoPubMedCDRT15
iHOPCDRT15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:35:09 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.