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CDRT15L2 (CMT1A duplicated region transcript 15 like 2)

Identity

Other alias-
HGNC (Hugo) CDRT15L2
LocusID (NCBI) 256223
Atlas_Id 61662
Location 17p11.2  [Link to chromosome band 17p11]
Location_base_pair Starts at 20579724 and ends at 20580911 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CDRT15L2   34075
Cards
Entrez_Gene (NCBI)CDRT15L2  256223  CMT1A duplicated region transcript 15 like 2
Aliases
GeneCards (Weizmann)CDRT15L2
Ensembl hg19 (Hinxton)ENSG00000214819 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214819 [Gene_View]  chr17:20579724-20580911 [Contig_View]  CDRT15L2 [Vega]
ICGC DataPortalENSG00000214819
TCGA cBioPortalCDRT15L2
AceView (NCBI)CDRT15L2
Genatlas (Paris)CDRT15L2
WikiGenes256223
SOURCE (Princeton)CDRT15L2
Genetics Home Reference (NIH)CDRT15L2
Genomic and cartography
GoldenPath hg38 (UCSC)CDRT15L2  -     chr17:20579724-20580911 +  17p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CDRT15L2  -     17p11.2   [Description]    (hg19-Feb_2009)
EnsemblCDRT15L2 - 17p11.2 [CytoView hg19]  CDRT15L2 - 17p11.2 [CytoView hg38]
Mapping of homologs : NCBICDRT15L2 [Mapview hg19]  CDRT15L2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA446206 AI016778
RefSeq transcript (Entrez)NM_001190790
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CDRT15L2
Cluster EST : UnigeneHs.131916 [ NCBI ]
CGAP (NCI)Hs.131916
Alternative Splicing GalleryENSG00000214819
Gene ExpressionCDRT15L2 [ NCBI-GEO ]   CDRT15L2 [ EBI - ARRAY_EXPRESS ]   CDRT15L2 [ SEEK ]   CDRT15L2 [ MEM ]
Gene Expression Viewer (FireBrowse)CDRT15L2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)256223
GTEX Portal (Tissue expression)CDRT15L2
Human Protein AtlasENSG00000214819-CDRT15L2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MXV6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MXV6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MXV6
Splice isoforms : SwissVarA8MXV6
PhosPhoSitePlusA8MXV6
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CDRT15L2
DMDM Disease mutations256223
Blocks (Seattle)CDRT15L2
SuperfamilyA8MXV6
Human Protein Atlas [tissue]ENSG00000214819-CDRT15L2 [tissue]
Peptide AtlasA8MXV6
IPIIPI00797233   
Protein Interaction databases
DIP (DOE-UCLA)A8MXV6
IntAct (EBI)A8MXV6
FunCoupENSG00000214819
BioGRIDCDRT15L2
STRING (EMBL)CDRT15L2
ZODIACCDRT15L2
Ontologies - Pathways
QuickGOA8MXV6
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkCDRT15L2
Atlas of Cancer Signalling NetworkCDRT15L2
Wikipedia pathwaysCDRT15L2
Orthology - Evolution
OrthoDB256223
GeneTree (enSembl)ENSG00000214819
Phylogenetic Trees/Animal Genes : TreeFamCDRT15L2
HOVERGENA8MXV6
HOGENOMA8MXV6
Homologs : HomoloGeneCDRT15L2
Homology/Alignments : Family Browser (UCSC)CDRT15L2
Gene fusions - Rearrangements
Tumor Fusion PortalCDRT15L2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDRT15L2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDRT15L2
dbVarCDRT15L2
ClinVarCDRT15L2
1000_GenomesCDRT15L2 
Exome Variant ServerCDRT15L2
ExAC (Exome Aggregation Consortium)ENSG00000214819
GNOMAD BrowserENSG00000214819
Genetic variants : HAPMAP256223
Genomic Variants (DGV)CDRT15L2 [DGVbeta]
DECIPHERCDRT15L2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCDRT15L2 
Mutations
ICGC Data PortalCDRT15L2 
TCGA Data PortalCDRT15L2 
Broad Tumor PortalCDRT15L2
OASIS PortalCDRT15L2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCDRT15L2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCDRT15L2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CDRT15L2
DgiDB (Drug Gene Interaction Database)CDRT15L2
DoCM (Curated mutations)CDRT15L2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CDRT15L2 (select a term)
intoGenCDRT15L2
Cancer3DCDRT15L2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCDRT15L2
MedgenCDRT15L2
Genetic Testing Registry CDRT15L2
NextProtA8MXV6 [Medical]
TSGene256223
GENETestsCDRT15L2
Target ValidationCDRT15L2
Huge Navigator CDRT15L2 [HugePedia]
snp3D : Map Gene to Disease256223
BioCentury BCIQCDRT15L2
ClinGenCDRT15L2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD256223
Chemical/Pharm GKB GenePA162382160
Clinical trialCDRT15L2
Miscellaneous
canSAR (ICR)CDRT15L2 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCDRT15L2
EVEXCDRT15L2
GoPubMedCDRT15L2
iHOPCDRT15L2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:35:09 CET 2017

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