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CDRT4 (CMT1A duplicated region transcript 4)

Identity

Alias (NCBI)-
HGNC (Hugo) CDRT4
HGNC Alias symbFLJ36674
LocusID (NCBI) 284040
Atlas_Id 61665
Location 17p12  [Link to chromosome band 17p12]
Location_base_pair Starts at 15436015 and ends at 15467621 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TVP23B (17p11.2) / CDRT4 (17p12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)CDRT4   14383
Cards
Entrez_Gene (NCBI)CDRT4    CMT1A duplicated region transcript 4
Aliases
GeneCards (Weizmann)CDRT4
Ensembl hg19 (Hinxton)ENSG00000239704 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000239704 [Gene_View]  ENSG00000239704 [Sequence]  chr17:15436015-15467621 [Contig_View]  CDRT4 [Vega]
ICGC DataPortalENSG00000239704
TCGA cBioPortalCDRT4
AceView (NCBI)CDRT4
Genatlas (Paris)CDRT4
SOURCE (Princeton)CDRT4
Genetics Home Reference (NIH)CDRT4
Genomic and cartography
GoldenPath hg38 (UCSC)CDRT4  -     chr17:15436015-15467621 -  17p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CDRT4  -     17p12   [Description]    (hg19-Feb_2009)
GoldenPathCDRT4 - 17p12 [CytoView hg19]  CDRT4 - 17p12 [CytoView hg38]
ImmunoBaseENSG00000239704
Genome Data Viewer NCBICDRT4 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK093993 AK126240 AK172733 BC029542 BM971397
RefSeq transcript (Entrez)NM_001204477 NM_173622
Consensus coding sequences : CCDS (NCBI)CDRT4
Gene ExpressionCDRT4 [ NCBI-GEO ]   CDRT4 [ EBI - ARRAY_EXPRESS ]   CDRT4 [ SEEK ]   CDRT4 [ MEM ]
Gene Expression Viewer (FireBrowse)CDRT4 [ Firebrowse - Broad ]
GenevisibleExpression of CDRT4 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284040
GTEX Portal (Tissue expression)CDRT4
Human Protein AtlasENSG00000239704-CDRT4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N9R6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N9R6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N9R6
PhosPhoSitePlusQ8N9R6
Domains : Interpro (EBI)CDRT4   
Domain families : Pfam (Sanger)CDRT4 (PF15213)   
Domain families : Pfam (NCBI)pfam15213   
Conserved Domain (NCBI)CDRT4
SuperfamilyQ8N9R6
AlphaFold pdb e-kbQ8N9R6   
Human Protein Atlas [tissue]ENSG00000239704-CDRT4 [tissue]
HPRD08208
Protein Interaction databases
DIP (DOE-UCLA)Q8N9R6
IntAct (EBI)Q8N9R6
BioGRIDCDRT4
STRING (EMBL)CDRT4
ZODIACCDRT4
Ontologies - Pathways
QuickGOQ8N9R6
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkCDRT4
Atlas of Cancer Signalling NetworkCDRT4
Wikipedia pathwaysCDRT4
Orthology - Evolution
OrthoDB284040
GeneTree (enSembl)ENSG00000239704
Phylogenetic Trees/Animal Genes : TreeFamCDRT4
Homologs : HomoloGeneCDRT4
Homology/Alignments : Family Browser (UCSC)CDRT4
Gene fusions - Rearrangements
Fusion : QuiverCDRT4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDRT4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDRT4
dbVarCDRT4
ClinVarCDRT4
MonarchCDRT4
1000_GenomesCDRT4 
Exome Variant ServerCDRT4
GNOMAD BrowserENSG00000239704
Varsome BrowserCDRT4
ACMGCDRT4 variants
VarityQ8N9R6
Genomic Variants (DGV)CDRT4 [DGVbeta]
DECIPHERCDRT4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCDRT4 
Mutations
ICGC Data PortalCDRT4 
TCGA Data PortalCDRT4 
Broad Tumor PortalCDRT4
OASIS PortalCDRT4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCDRT4  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCDRT4
Mutations and Diseases : HGMDCDRT4
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCDRT4
DgiDB (Drug Gene Interaction Database)CDRT4
DoCM (Curated mutations)CDRT4
CIViC (Clinical Interpretations of Variants in Cancer)CDRT4
Cancer3DCDRT4
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCDRT4
MedgenCDRT4
Genetic Testing Registry CDRT4
NextProtQ8N9R6 [Medical]
GENETestsCDRT4
Target ValidationCDRT4
Huge Navigator CDRT4 [HugePedia]
ClinGenCDRT4
Clinical trials, drugs, therapy
MyCancerGenomeCDRT4
Protein Interactions : CTDCDRT4
Pharm GKB GenePA26340
PharosQ8N9R6
Clinical trialCDRT4
Miscellaneous
canSAR (ICR)CDRT4
HarmonizomeCDRT4
DataMed IndexCDRT4
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCDRT4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:45:37 CEST 2021

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