Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CDRT4 (CMT1A duplicated region transcript 4)

Identity

Alias_symbol (synonym)FLJ36674
Other alias-
HGNC (Hugo) CDRT4
LocusID (NCBI) 284040
Atlas_Id 61665
Location 17p12  [Link to chromosome band 17p12]
Location_base_pair Starts at 15436015 and ends at 15467611 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TVP23B (17p11.2) / CDRT4 (17p12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CDRT4   14383
Cards
Entrez_Gene (NCBI)CDRT4  284040  CMT1A duplicated region transcript 4
Aliases
GeneCards (Weizmann)CDRT4
Ensembl hg19 (Hinxton)ENSG00000239704 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000239704 [Gene_View]  chr17:15436015-15467611 [Contig_View]  CDRT4 [Vega]
ICGC DataPortalENSG00000239704
TCGA cBioPortalCDRT4
AceView (NCBI)CDRT4
Genatlas (Paris)CDRT4
WikiGenes284040
SOURCE (Princeton)CDRT4
Genetics Home Reference (NIH)CDRT4
Genomic and cartography
GoldenPath hg38 (UCSC)CDRT4  -     chr17:15436015-15467611 -  17p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CDRT4  -     17p12   [Description]    (hg19-Feb_2009)
EnsemblCDRT4 - 17p12 [CytoView hg19]  CDRT4 - 17p12 [CytoView hg38]
Mapping of homologs : NCBICDRT4 [Mapview hg19]  CDRT4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093993 AK126240 AK172733 BC029542 BM971397
RefSeq transcript (Entrez)NM_001204477 NM_173622
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CDRT4
Cluster EST : UnigeneHs.731765 [ NCBI ]
CGAP (NCI)Hs.731765
Alternative Splicing GalleryENSG00000239704
Gene ExpressionCDRT4 [ NCBI-GEO ]   CDRT4 [ EBI - ARRAY_EXPRESS ]   CDRT4 [ SEEK ]   CDRT4 [ MEM ]
Gene Expression Viewer (FireBrowse)CDRT4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284040
GTEX Portal (Tissue expression)CDRT4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N9R6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N9R6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N9R6
Splice isoforms : SwissVarQ8N9R6
PhosPhoSitePlusQ8N9R6
Domains : Interpro (EBI)CDRT4   
Domain families : Pfam (Sanger)CDRT4 (PF15213)   
Domain families : Pfam (NCBI)pfam15213   
Conserved Domain (NCBI)CDRT4
DMDM Disease mutations284040
Blocks (Seattle)CDRT4
SuperfamilyQ8N9R6
Human Protein AtlasENSG00000239704
Peptide AtlasQ8N9R6
HPRD08208
IPIIPI01025245   IPI01026071   IPI00984658   
Protein Interaction databases
DIP (DOE-UCLA)Q8N9R6
IntAct (EBI)Q8N9R6
FunCoupENSG00000239704
BioGRIDCDRT4
STRING (EMBL)CDRT4
ZODIACCDRT4
Ontologies - Pathways
QuickGOQ8N9R6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCDRT4
Atlas of Cancer Signalling NetworkCDRT4
Wikipedia pathwaysCDRT4
Orthology - Evolution
OrthoDB284040
GeneTree (enSembl)ENSG00000239704
Phylogenetic Trees/Animal Genes : TreeFamCDRT4
HOVERGENQ8N9R6
HOGENOMQ8N9R6
Homologs : HomoloGeneCDRT4
Homology/Alignments : Family Browser (UCSC)CDRT4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDRT4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDRT4
dbVarCDRT4
ClinVarCDRT4
1000_GenomesCDRT4 
Exome Variant ServerCDRT4
ExAC (Exome Aggregation Consortium)CDRT4 (select the gene name)
Genetic variants : HAPMAP284040
Genomic Variants (DGV)CDRT4 [DGVbeta]
DECIPHERCDRT4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCDRT4 
Mutations
ICGC Data PortalCDRT4 
TCGA Data PortalCDRT4 
Broad Tumor PortalCDRT4
OASIS PortalCDRT4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCDRT4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCDRT4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CDRT4
DgiDB (Drug Gene Interaction Database)CDRT4
DoCM (Curated mutations)CDRT4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CDRT4 (select a term)
intoGenCDRT4
Cancer3DCDRT4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCDRT4
Genetic Testing Registry CDRT4
NextProtQ8N9R6 [Medical]
TSGene284040
GENETestsCDRT4
Target ValidationCDRT4
Huge Navigator CDRT4 [HugePedia]
snp3D : Map Gene to Disease284040
BioCentury BCIQCDRT4
ClinGenCDRT4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284040
Chemical/Pharm GKB GenePA26340
Clinical trialCDRT4
Miscellaneous
canSAR (ICR)CDRT4 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCDRT4
EVEXCDRT4
GoPubMedCDRT4
iHOPCDRT4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:43:02 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.