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CDRT7 (CMT1A duplicated region transcript 7 (non-protein coding))

Identity

Alias_symbol (synonym)NCRNA00025
LINC00025
Other alias
HGNC (Hugo) CDRT7
LocusID (NCBI) 94150
Atlas_Id 61666
Location 17p12  [Link to chromosome band 17p12]
Location_base_pair Starts at 15030975 and ends at 15031957 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CDRT7   14386
Cards
Entrez_Gene (NCBI)CDRT7  94150  CMT1A duplicated region transcript 7 (non-protein coding)
AliasesLINC00025; NCRNA00025
GeneCards (Weizmann)CDRT7
Ensembl hg19 (Hinxton)ENSG00000259944 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000259944 [Gene_View]  chr17:15030975-15031957 [Contig_View]  CDRT7 [Vega]
ICGC DataPortalENSG00000259944
TCGA cBioPortalCDRT7
AceView (NCBI)CDRT7
Genatlas (Paris)CDRT7
WikiGenes94150
SOURCE (Princeton)CDRT7
Genetics Home Reference (NIH)CDRT7
Genomic and cartography
GoldenPath hg38 (UCSC)CDRT7  -     chr17:15030975-15031957 +  17p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CDRT7  -     17p12   [Description]    (hg19-Feb_2009)
EnsemblCDRT7 - 17p12 [CytoView hg19]  CDRT7 - 17p12 [CytoView hg38]
Mapping of homologs : NCBICDRT7 [Mapview hg19]  CDRT7 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI218510 BX093265
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CDRT7
Cluster EST : UnigeneHs.147654 [ NCBI ]
CGAP (NCI)Hs.147654
Alternative Splicing GalleryENSG00000259944
Gene ExpressionCDRT7 [ NCBI-GEO ]   CDRT7 [ EBI - ARRAY_EXPRESS ]   CDRT7 [ SEEK ]   CDRT7 [ MEM ]
Gene Expression Viewer (FireBrowse)CDRT7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)94150
GTEX Portal (Tissue expression)CDRT7
Human Protein AtlasENSG00000259944-CDRT7 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CDRT7
DMDM Disease mutations94150
Blocks (Seattle)CDRT7
Human Protein Atlas [tissue]ENSG00000259944-CDRT7 [tissue]
Protein Interaction databases
FunCoupENSG00000259944
BioGRIDCDRT7
STRING (EMBL)CDRT7
ZODIACCDRT7
Ontologies - Pathways
Huge Navigator CDRT7 [HugePedia]
snp3D : Map Gene to Disease94150
BioCentury BCIQCDRT7
ClinGenCDRT7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD94150
Chemical/Pharm GKB GenePA26343
Clinical trialCDRT7
Miscellaneous
canSAR (ICR)CDRT7 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCDRT7
EVEXCDRT7
GoPubMedCDRT7
iHOPCDRT7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:35:10 CET 2017

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