Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CDS1 (CDP-diacylglycerol synthase 1)

Identity

Alias (NCBI)CDS 1
HGNC (Hugo) CDS1
HGNC Alias namephosphatidate cytidylyltransferase
LocusID (NCBI) 1040
Atlas_Id 40041
Location 4q21.23  [Link to chromosome band 4q21]
Location_base_pair Starts at 84583127 and ends at 84651334 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CDS1 (4q21.23) / CDS1 (4q21.23)RPLP0 (12q24.23) / CDS1 (4q21.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)CDS1   1800
Cards
Entrez_Gene (NCBI)CDS1  1040  CDP-diacylglycerol synthase 1
AliasesCDS
GeneCards (Weizmann)CDS1
Ensembl hg19 (Hinxton)ENSG00000163624 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163624 [Gene_View]  ENSG00000163624 [Sequence]  chr4:84583127-84651334 [Contig_View]  CDS1 [Vega]
ICGC DataPortalENSG00000163624
TCGA cBioPortalCDS1
AceView (NCBI)CDS1
Genatlas (Paris)CDS1
WikiGenes1040
SOURCE (Princeton)CDS1
Genetics Home Reference (NIH)CDS1
Genomic and cartography
GoldenPath hg38 (UCSC)CDS1  -     chr4:84583127-84651334 +  4q21.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CDS1  -     4q21.23   [Description]    (hg19-Feb_2009)
GoldenPathCDS1 - 4q21.23 [CytoView hg19]  CDS1 - 4q21.23 [CytoView hg38]
ImmunoBaseENSG00000163624
genome Data Viewer NCBICDS1 [Mapview hg19]  
OMIM603548   
Gene and transcription
Genbank (Entrez)AI673547 AK026697 AK314245 AU139278 BC074833
RefSeq transcript (Entrez)NM_001263
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CDS1
Alternative Splicing GalleryENSG00000163624
Gene ExpressionCDS1 [ NCBI-GEO ]   CDS1 [ EBI - ARRAY_EXPRESS ]   CDS1 [ SEEK ]   CDS1 [ MEM ]
Gene Expression Viewer (FireBrowse)CDS1 [ Firebrowse - Broad ]
GenevisibleExpression of CDS1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1040
GTEX Portal (Tissue expression)CDS1
Human Protein AtlasENSG00000163624-CDS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92903   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92903  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92903
Splice isoforms : SwissVarQ92903
PhosPhoSitePlusQ92903
Domaine pattern : Prosite (Expaxy)CDS (PS01315)   
Domains : Interpro (EBI)PC_trans    PC_Trfase_euk   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CDS1
DMDM Disease mutations1040
Blocks (Seattle)CDS1
SuperfamilyQ92903
Human Protein Atlas [tissue]ENSG00000163624-CDS1 [tissue]
Peptide AtlasQ92903
HPRD11944
IPIIPI00024234   IPI00964098   
Protein Interaction databases
DIP (DOE-UCLA)Q92903
IntAct (EBI)Q92903
FunCoupENSG00000163624
BioGRIDCDS1
STRING (EMBL)CDS1
ZODIACCDS1
Ontologies - Pathways
QuickGOQ92903
Ontology : AmiGOdiacylglycerol cholinephosphotransferase activity  phosphatidate cytidylyltransferase activity  endoplasmic reticulum  endoplasmic reticulum  endoplasmic reticulum membrane  endoplasmic reticulum membrane  endoplasmic reticulum membrane  CDP-choline pathway  phosphatidylinositol biosynthetic process  phosphatidylinositol biosynthetic process  signal transduction  phototransduction  integral component of membrane  CDP-diacylglycerol biosynthetic process  CDP-diacylglycerol biosynthetic process  positive regulation of fat cell differentiation  lipid droplet formation  
Ontology : EGO-EBIdiacylglycerol cholinephosphotransferase activity  phosphatidate cytidylyltransferase activity  endoplasmic reticulum  endoplasmic reticulum  endoplasmic reticulum membrane  endoplasmic reticulum membrane  endoplasmic reticulum membrane  CDP-choline pathway  phosphatidylinositol biosynthetic process  phosphatidylinositol biosynthetic process  signal transduction  phototransduction  integral component of membrane  CDP-diacylglycerol biosynthetic process  CDP-diacylglycerol biosynthetic process  positive regulation of fat cell differentiation  lipid droplet formation  
Pathways : KEGGGlycerophospholipid metabolism    Phosphatidylinositol signaling system   
NDEx NetworkCDS1
Atlas of Cancer Signalling NetworkCDS1
Wikipedia pathwaysCDS1
Orthology - Evolution
OrthoDB1040
GeneTree (enSembl)ENSG00000163624
Phylogenetic Trees/Animal Genes : TreeFamCDS1
HOGENOMQ92903
Homologs : HomoloGeneCDS1
Homology/Alignments : Family Browser (UCSC)CDS1
Gene fusions - Rearrangements
Fusion : QuiverCDS1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDS1
dbVarCDS1
ClinVarCDS1
MonarchCDS1
1000_GenomesCDS1 
Exome Variant ServerCDS1
GNOMAD BrowserENSG00000163624
Varsome BrowserCDS1
Genetic variants : HAPMAP1040
Genomic Variants (DGV)CDS1 [DGVbeta]
DECIPHERCDS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCDS1 
Mutations
ICGC Data PortalCDS1 
TCGA Data PortalCDS1 
Broad Tumor PortalCDS1
OASIS PortalCDS1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCDS1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCDS1
Mutations and Diseases : HGMDCDS1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CDS1
DgiDB (Drug Gene Interaction Database)CDS1
DoCM (Curated mutations)CDS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CDS1 (select a term)
intoGenCDS1
Cancer3DCDS1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603548   
Orphanet
DisGeNETCDS1
MedgenCDS1
Genetic Testing Registry CDS1
NextProtQ92903 [Medical]
TSGene1040
GENETestsCDS1
Target ValidationCDS1
Huge Navigator CDS1 [HugePedia]
snp3D : Map Gene to Disease1040
BioCentury BCIQCDS1
ClinGenCDS1
Clinical trials, drugs, therapy
Protein Interactions : CTD1040
Pharm GKB GenePA26346
Clinical trialCDS1
Miscellaneous
canSAR (ICR)CDS1 (select the gene name)
HarmonizomeCDS1
DataMed IndexCDS1
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCDS1
EVEXCDS1
GoPubMedCDS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 14 14:05:29 CEST 2020

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