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CDSN (corneodesmosin)

Identity

Alias_symbol (synonym)D6S586E
Other aliasHTSS
HTSS1
HYPT2
PSS
PSS1
S
HGNC (Hugo) CDSN
LocusID (NCBI) 1041
Atlas_Id 61668
Location 6p21.33  [Link to chromosome band 6p21]
Location_base_pair Starts at 31115088 and ends at 31120475 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CDSN   1802
Cards
Entrez_Gene (NCBI)CDSN  1041  corneodesmosin
AliasesHTSS; HTSS1; HYPT2; PSS; 
PSS1; S
GeneCards (Weizmann)CDSN
Ensembl hg19 (Hinxton)ENSG00000204539 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204539 [Gene_View]  chr6:31115088-31120475 [Contig_View]  CDSN [Vega]
ICGC DataPortalENSG00000204539
TCGA cBioPortalCDSN
AceView (NCBI)CDSN
Genatlas (Paris)CDSN
WikiGenes1041
SOURCE (Princeton)CDSN
Genetics Home Reference (NIH)CDSN
Genomic and cartography
GoldenPath hg38 (UCSC)CDSN  -     chr6:31115088-31120475 -  6p21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CDSN  -     6p21.33   [Description]    (hg19-Feb_2009)
EnsemblCDSN - 6p21.33 [CytoView hg19]  CDSN - 6p21.33 [CytoView hg38]
Mapping of homologs : NCBICDSN [Mapview hg19]  CDSN [Mapview hg38]
OMIM146520   270300   602593   
Gene and transcription
Genbank (Entrez)AF030130 AI768204 AK292636 AU134804 BC031993
RefSeq transcript (Entrez)NM_001264
RefSeq genomic (Entrez)NC_000006 NC_018917 NG_012192 NG_021348 NT_113891 NT_167245 NT_167246 NT_167247 NT_167248
Consensus coding sequences : CCDS (NCBI)CDSN
Cluster EST : UnigeneHs.556031 [ NCBI ]
CGAP (NCI)Hs.556031
Alternative Splicing GalleryENSG00000204539
Gene ExpressionCDSN [ NCBI-GEO ]   CDSN [ EBI - ARRAY_EXPRESS ]   CDSN [ SEEK ]   CDSN [ MEM ]
Gene Expression Viewer (FireBrowse)CDSN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1041
GTEX Portal (Tissue expression)CDSN
Human Protein AtlasENSG00000204539-CDSN [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15517   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15517  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15517
Splice isoforms : SwissVarQ15517
PhosPhoSitePlusQ15517
Domains : Interpro (EBI)Corneodesmosin   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CDSN
DMDM Disease mutations1041
Blocks (Seattle)CDSN
SuperfamilyQ15517
Human Protein Atlas [tissue]ENSG00000204539-CDSN [tissue]
Peptide AtlasQ15517
HPRD03998
IPIIPI00386809   IPI00892693   IPI00964218   
Protein Interaction databases
DIP (DOE-UCLA)Q15517
IntAct (EBI)Q15517
FunCoupENSG00000204539
BioGRIDCDSN
STRING (EMBL)CDSN
ZODIACCDSN
Ontologies - Pathways
QuickGOQ15517
Ontology : AmiGO###############################################################################################################################################################################################################################################################                                
Ontology : EGO-EBI###############################################################################################################################################################################################################################################################                                
NDEx NetworkCDSN
Atlas of Cancer Signalling NetworkCDSN
Wikipedia pathwaysCDSN
Orthology - Evolution
OrthoDB1041
GeneTree (enSembl)ENSG00000204539
Phylogenetic Trees/Animal Genes : TreeFamCDSN
HOVERGENQ15517
HOGENOMQ15517
Homologs : HomoloGeneCDSN
Homology/Alignments : Family Browser (UCSC)CDSN
Gene fusions - Rearrangements
Fusion : QuiverCDSN
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDSN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDSN
dbVarCDSN
ClinVarCDSN
1000_GenomesCDSN 
Exome Variant ServerCDSN
ExAC (Exome Aggregation Consortium)ENSG00000204539
GNOMAD BrowserENSG00000204539
Genetic variants : HAPMAP1041
Genomic Variants (DGV)CDSN [DGVbeta]
DECIPHERCDSN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCDSN 
Mutations
ICGC Data PortalCDSN 
TCGA Data PortalCDSN 
Broad Tumor PortalCDSN
OASIS PortalCDSN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCDSN  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCDSN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CDSN
DgiDB (Drug Gene Interaction Database)CDSN
DoCM (Curated mutations)CDSN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CDSN (select a term)
intoGenCDSN
Cancer3DCDSN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM146520    270300    602593   
Orphanet20071    12032   
DisGeNETCDSN
MedgenCDSN
Genetic Testing Registry CDSN
NextProtQ15517 [Medical]
TSGene1041
GENETestsCDSN
Target ValidationCDSN
Huge Navigator CDSN [HugePedia]
snp3D : Map Gene to Disease1041
BioCentury BCIQCDSN
ClinGenCDSN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1041
Chemical/Pharm GKB GenePA26348
Clinical trialCDSN
Miscellaneous
canSAR (ICR)CDSN (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCDSN
EVEXCDSN
GoPubMedCDSN
iHOPCDSN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Feb 23 18:14:24 CET 2018

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