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CDV3 (CDV3 homolog)

Identity

Alias_namesCDV3 homolog (mouse)
Alias_symbol (synonym)H41
Other alias
HGNC (Hugo) CDV3
LocusID (NCBI) 55573
Atlas_Id 56423
Location 3q22.1  [Link to chromosome band 3q22]
Location_base_pair Starts at 133573590 and ends at 133590274 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ATF4 (22q13.1) / CDV3 (3q22.1)CDV3 (3q22.1) / IMPDH1 (7q32.1)CDV3 (3q22.1) / MBP (18q23)
CDV3 (3q22.1) / TMEM108 (3q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CDV3   26928
Cards
Entrez_Gene (NCBI)CDV3  55573  CDV3 homolog
AliasesH41
GeneCards (Weizmann)CDV3
Ensembl hg19 (Hinxton)ENSG00000091527 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000091527 [Gene_View]  chr3:133573590-133590274 [Contig_View]  CDV3 [Vega]
ICGC DataPortalENSG00000091527
TCGA cBioPortalCDV3
AceView (NCBI)CDV3
Genatlas (Paris)CDV3
WikiGenes55573
SOURCE (Princeton)CDV3
Genetics Home Reference (NIH)CDV3
Genomic and cartography
GoldenPath hg38 (UCSC)CDV3  -     chr3:133573590-133590274 +  3q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CDV3  -     3q22.1   [Description]    (hg19-Feb_2009)
EnsemblCDV3 - 3q22.1 [CytoView hg19]  CDV3 - 3q22.1 [CytoView hg38]
Mapping of homologs : NCBICDV3 [Mapview hg19]  CDV3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF103803 AK025647 AK026272 AK096865 BC007338
RefSeq transcript (Entrez)NM_001134422 NM_001134423 NM_001282762 NM_001282763 NM_001282764 NM_001282765 NM_017548
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CDV3
Cluster EST : UnigeneHs.518265 [ NCBI ]
CGAP (NCI)Hs.518265
Alternative Splicing GalleryENSG00000091527
Gene ExpressionCDV3 [ NCBI-GEO ]   CDV3 [ EBI - ARRAY_EXPRESS ]   CDV3 [ SEEK ]   CDV3 [ MEM ]
Gene Expression Viewer (FireBrowse)CDV3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55573
GTEX Portal (Tissue expression)CDV3
Human Protein AtlasENSG00000091527-CDV3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UKY7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UKY7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UKY7
Splice isoforms : SwissVarQ9UKY7
PhosPhoSitePlusQ9UKY7
Domains : Interpro (EBI)CDV3   
Domain families : Pfam (Sanger)CDV3 (PF15359)   
Domain families : Pfam (NCBI)pfam15359   
Conserved Domain (NCBI)CDV3
DMDM Disease mutations55573
Blocks (Seattle)CDV3
SuperfamilyQ9UKY7
Human Protein Atlas [tissue]ENSG00000091527-CDV3 [tissue]
Peptide AtlasQ9UKY7
HPRD13627
IPIIPI00014197   IPI00798278   IPI00964446   IPI00793920   IPI00966539   IPI00967893   IPI00795163   IPI00966255   IPI00965306   
Protein Interaction databases
DIP (DOE-UCLA)Q9UKY7
IntAct (EBI)Q9UKY7
FunCoupENSG00000091527
BioGRIDCDV3
STRING (EMBL)CDV3
ZODIACCDV3
Ontologies - Pathways
QuickGOQ9UKY7
Ontology : AmiGOmolecular_function  cytoplasm  cell proliferation  
Ontology : EGO-EBImolecular_function  cytoplasm  cell proliferation  
NDEx NetworkCDV3
Atlas of Cancer Signalling NetworkCDV3
Wikipedia pathwaysCDV3
Orthology - Evolution
OrthoDB55573
GeneTree (enSembl)ENSG00000091527
Phylogenetic Trees/Animal Genes : TreeFamCDV3
HOVERGENQ9UKY7
HOGENOMQ9UKY7
Homologs : HomoloGeneCDV3
Homology/Alignments : Family Browser (UCSC)CDV3
Gene fusions - Rearrangements
Tumor Fusion PortalCDV3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDV3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDV3
dbVarCDV3
ClinVarCDV3
1000_GenomesCDV3 
Exome Variant ServerCDV3
ExAC (Exome Aggregation Consortium)ENSG00000091527
GNOMAD BrowserENSG00000091527
Genetic variants : HAPMAP55573
Genomic Variants (DGV)CDV3 [DGVbeta]
DECIPHERCDV3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCDV3 
Mutations
ICGC Data PortalCDV3 
TCGA Data PortalCDV3 
Broad Tumor PortalCDV3
OASIS PortalCDV3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCDV3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCDV3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CDV3
DgiDB (Drug Gene Interaction Database)CDV3
DoCM (Curated mutations)CDV3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CDV3 (select a term)
intoGenCDV3
Cancer3DCDV3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCDV3
MedgenCDV3
Genetic Testing Registry CDV3
NextProtQ9UKY7 [Medical]
TSGene55573
GENETestsCDV3
Target ValidationCDV3
Huge Navigator CDV3 [HugePedia]
snp3D : Map Gene to Disease55573
BioCentury BCIQCDV3
ClinGenCDV3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55573
Chemical/Pharm GKB GenePA142672138
Clinical trialCDV3
Miscellaneous
canSAR (ICR)CDV3 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCDV3
EVEXCDV3
GoPubMedCDV3
iHOPCDV3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:07:12 CET 2017

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