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CDX1 (caudal type homeobox 1)

Identity

Other names-
HGNC (Hugo) CDX1
LocusID (NCBI) 1044
Location 5q32
Location_base_pair Starts at 149546344 and ends at 149564121 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CDX1   1805
Entrez_Gene (NCBI)CDX1  1044  caudal type homeobox 1
Cards
GeneCards (Weizmann)CDX1
Ensembl (Hinxton)ENSG00000113722 [Gene_View]  chr5:149546344-149564121 [Contig_View]  CDX1 [Vega]
AceView (NCBI)CDX1
Genatlas (Paris)CDX1
SOURCE (Stanford)NM_001804
Genomic and cartography
GoldenPath (UCSC)CDX1  -  5q32   chr5:149546344-149564121 +  5q32   [Description]    (hg19-Feb_2009)
EnsemblCDX1 - 5q32 [CytoView]
Mapping of homologs : NCBICDX1 [Mapview]
OMIM600746   
Gene and transcription
Genbank (Entrez)AF239666 BC096249 BC096250 BC096251 BC096252
RefSeq transcript (SRS)NM_001804
RefSeq transcript (Entrez)NM_001804
RefSeq genomic (SRS)AC_000137 NC_000005 NC_018916 NT_029289 NW_001838953 NW_004078025
RefSeq genomic (Entrez)AC_000137 NC_000005 NC_018916 NT_029289 NW_001838953 NW_004078025
Consensus coding sequences : CCDS (NCBI)CDX1
Cluster EST : UnigeneHs.1545 [ SRS ] Hs.1545 [ NCBI ]
CGAP (NCI)Hs.1545
Alternative Splicing : Fast-db (Paris)GSHG0024370
Alternative Splicing GalleryENSG00000113722
Gene ExpressionCDX1 [ NCBI-GEO ]   CDX1 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP47902 (SRS) P47902 (Uniprot)
NextProtP47902
With graphics : InterProP47902
Splice isoforms : SwissVarP47902(Swissvar)
Domaine pattern : Prosite (SRS)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domaine pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (SRS)Caudal_activation_dom    Homeobox_CS    Homeobox_metazoa    Homeodomain    Homeodomain-like    HTH_motif   
Domains : Interpro (EBI)Caudal_activation_dom    Homeobox_CS    Homeobox_metazoa    Homeodomain    Homeodomain-like    HTH_motif   
Related proteins : CluSTrP47902
Domain families : Pfam (SRS)Caudal_act (PF04731)    Homeobox (PF00046)   
Domain families : Pfam (Sanger)Caudal_act (PF04731)    Homeobox (PF00046)   
Domain families : Pfam (NCBI)pfam04731    pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
DMDM1044
Blocks (Seattle)P47902
Human Protein AtlasENSG00000113722
HPRD02849
IPIIPI00790637   IPI00784439   IPI00795021   IPI00607798   
Protein Interaction databases
DIP (DOE-UCLA)P47902
IntAct (EBI)P47902
FunCoupENSG00000113722
REACTOMECDX1
Protein Interaction Database1044
BioGRIDCDX1
InParanoidP47902
Interologous Interaction database P47902
IntegromeDBCDX1
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CDX1
SNP (GeneSNP Utah)CDX1
SNP : HGBaseCDX1
Genetic variants : HAPMAPCDX1
Somatic Mutations in Cancer : COSMICCDX1 
CONAN: Copy Number AnalysisCDX1 
Mutations and Diseases : HGMDCDX1
OMIM600746   
GENETests600746   
Disease Genetic AssociationCDX1
Huge Navigator CDX1 [HugePedia]  CDX1 [HugeCancerGEM]
Genomic VariantsCDX1  CDX1 [DGVbeta]
snp3D : Map Gene to Disease1044
General knowledge
Homologs : HomoloGeneCDX1
Homology/Alignments : Family Browser (UCSC)CDX1
Phylogenetic Trees/Animal Genes : TreeFamCDX1
Chemical/Protein Interactions : CTD1044
Chemical/Pharm GKB GenePA26351
Clinical trialCDX1
Cancer Resource (Charite)ENSG00000113722
Ontology : AmiGOtranscription regulatory region sequence-specific DNA binding  sequence-specific DNA binding transcription factor activity  nucleus  organ morphogenesis  anterior/posterior pattern specification  positive regulation of transcription from RNA polymerase II promoter  bone morphogenesis  
Ontology : EGO-EBItranscription regulatory region sequence-specific DNA binding  sequence-specific DNA binding transcription factor activity  nucleus  organ morphogenesis  anterior/posterior pattern specification  positive regulation of transcription from RNA polymerase II promoter  bone morphogenesis  
Other databases
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
PubGeneCDX1
iHOPCDX1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:44:30 CEST 2013
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