Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CDX4 (caudal type homeobox 4)

Identity

Alias_namescaudal type homeo box transcription factor 4
Other alias-
HGNC (Hugo) CDX4
LocusID (NCBI) 1046
Atlas_Id 61670
Location Xq13.2  [Link to chromosome band Xq13]
Location_base_pair Starts at 73447254 and ends at 73454585 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CDX4   1808
Cards
Entrez_Gene (NCBI)CDX4  1046  caudal type homeobox 4
Aliases
GeneCards (Weizmann)CDX4
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chrX:73447254-73454585 [Contig_View]  CDX4 [Vega]
TCGA cBioPortalCDX4
AceView (NCBI)CDX4
Genatlas (Paris)CDX4
WikiGenes1046
SOURCE (Princeton)CDX4
Genetics Home Reference (NIH)CDX4
Genomic and cartography
GoldenPath hg38 (UCSC)CDX4  -     chrX:73447254-73454585 +  Xq13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CDX4  -     Xq13.2   [Description]    (hg19-Feb_2009)
EnsemblCDX4 - Xq13.2 [CytoView hg19]  CDX4 - Xq13.2 [CytoView hg38]
Mapping of homologs : NCBICDX4 [Mapview hg19]  CDX4 [Mapview hg38]
OMIM300025   
Gene and transcription
Genbank (Entrez)BC128233
RefSeq transcript (Entrez)NM_005193
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CDX4
Cluster EST : UnigeneHs.553488 [ NCBI ]
CGAP (NCI)Hs.553488
Gene ExpressionCDX4 [ NCBI-GEO ]   CDX4 [ EBI - ARRAY_EXPRESS ]   CDX4 [ SEEK ]   CDX4 [ MEM ]
Gene Expression Viewer (FireBrowse)CDX4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1046
GTEX Portal (Tissue expression)CDX4
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14627   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14627  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14627
Splice isoforms : SwissVarO14627
PhosPhoSitePlusO14627
Domaine pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Caudal_activation_dom    Homeobox-like    Homeobox_CS    Homeobox_dom    Homeobox_metazoa    HTH_motif   
Domain families : Pfam (Sanger)Caudal_act (PF04731)    Homeobox (PF00046)   
Domain families : Pfam (NCBI)pfam04731    pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)CDX4
DMDM Disease mutations1046
Blocks (Seattle)CDX4
SuperfamilyO14627
Peptide AtlasO14627
HPRD02065
IPIIPI00023058   
Protein Interaction databases
DIP (DOE-UCLA)O14627
IntAct (EBI)O14627
BioGRIDCDX4
STRING (EMBL)CDX4
ZODIACCDX4
Ontologies - Pathways
QuickGOO14627
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II core promoter proximal region sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  blood vessel development  protein binding  nucleus  transcription from RNA polymerase II promoter  animal organ morphogenesis  anterior/posterior axis specification  cell differentiation  positive regulation of transcription from RNA polymerase II promoter  positive regulation of transcription from RNA polymerase II promoter  labyrinthine layer development  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II core promoter proximal region sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  blood vessel development  protein binding  nucleus  transcription from RNA polymerase II promoter  animal organ morphogenesis  anterior/posterior axis specification  cell differentiation  positive regulation of transcription from RNA polymerase II promoter  positive regulation of transcription from RNA polymerase II promoter  labyrinthine layer development  
NDEx NetworkCDX4
Atlas of Cancer Signalling NetworkCDX4
Wikipedia pathwaysCDX4
Orthology - Evolution
OrthoDB1046
Phylogenetic Trees/Animal Genes : TreeFamCDX4
HOVERGENO14627
HOGENOMO14627
Homologs : HomoloGeneCDX4
Homology/Alignments : Family Browser (UCSC)CDX4
Gene fusions - Rearrangements
Tumor Fusion PortalCDX4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDX4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDX4
dbVarCDX4
ClinVarCDX4
1000_GenomesCDX4 
Exome Variant ServerCDX4
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP1046
Genomic Variants (DGV)CDX4 [DGVbeta]
DECIPHERCDX4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCDX4 
Mutations
ICGC Data PortalCDX4 
TCGA Data PortalCDX4 
Broad Tumor PortalCDX4
OASIS PortalCDX4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCDX4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCDX4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CDX4
DgiDB (Drug Gene Interaction Database)CDX4
DoCM (Curated mutations)CDX4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CDX4 (select a term)
intoGenCDX4
Cancer3DCDX4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300025   
Orphanet
DisGeNETCDX4
MedgenCDX4
Genetic Testing Registry CDX4
NextProtO14627 [Medical]
TSGene1046
GENETestsCDX4
Target ValidationCDX4
Huge Navigator CDX4 [HugePedia]
snp3D : Map Gene to Disease1046
BioCentury BCIQCDX4
ClinGenCDX4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1046
Chemical/Pharm GKB GenePA26353
Clinical trialCDX4
Miscellaneous
canSAR (ICR)CDX4 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCDX4
EVEXCDX4
GoPubMedCDX4
iHOPCDX4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 19:23:38 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.