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CDX4 (caudal type homeobox 4)

Identity

Alias_namescaudal type homeo box transcription factor 4
Other alias-
HGNC (Hugo) CDX4
LocusID (NCBI) 1046
Atlas_Id 61670
Location Xq13.2  [Link to chromosome band Xq13]
Location_base_pair Starts at 72667090 and ends at 72674421 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CDX4   1808
Cards
Entrez_Gene (NCBI)CDX4  1046  caudal type homeobox 4
Aliases
GeneCards (Weizmann)CDX4
Ensembl hg19 (Hinxton) [Gene_View]  chrX:72667090-72674421 [Contig_View]  CDX4 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chrX:72667090-72674421 [Contig_View]  CDX4 [Vega]
TCGA cBioPortalCDX4
AceView (NCBI)CDX4
Genatlas (Paris)CDX4
WikiGenes1046
SOURCE (Princeton)CDX4
Genetics Home Reference (NIH)CDX4
Genomic and cartography
GoldenPath hg19 (UCSC)CDX4  -     chrX:72667090-72674421 +  Xq13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CDX4  -     Xq13.2   [Description]    (hg38-Dec_2013)
EnsemblCDX4 - Xq13.2 [CytoView hg19]  CDX4 - Xq13.2 [CytoView hg38]
Mapping of homologs : NCBICDX4 [Mapview hg19]  CDX4 [Mapview hg38]
OMIM300025   
Gene and transcription
Genbank (Entrez)BC128233
RefSeq transcript (Entrez)NM_005193
RefSeq genomic (Entrez)NC_000023 NC_018934 NT_011651 NW_004929443
Consensus coding sequences : CCDS (NCBI)CDX4
Cluster EST : UnigeneHs.553488 [ NCBI ]
CGAP (NCI)Hs.553488
Gene ExpressionCDX4 [ NCBI-GEO ]   CDX4 [ EBI - ARRAY_EXPRESS ]   CDX4 [ SEEK ]   CDX4 [ MEM ]
Gene Expression Viewer (FireBrowse)CDX4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1046
GTEX Portal (Tissue expression)CDX4
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14627   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14627  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14627
Splice isoforms : SwissVarO14627
PhosPhoSitePlusO14627
Domaine pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Caudal_activation_dom    Homeobox_CS    Homeobox_dom    Homeobox_metazoa    Homeodomain-like    HTH_motif   
Domain families : Pfam (Sanger)Caudal_act (PF04731)    Homeobox (PF00046)   
Domain families : Pfam (NCBI)pfam04731    pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)CDX4
DMDM Disease mutations1046
Blocks (Seattle)CDX4
SuperfamilyO14627
Peptide AtlasO14627
HPRD02065
IPIIPI00023058   
Protein Interaction databases
DIP (DOE-UCLA)O14627
IntAct (EBI)O14627
BioGRIDCDX4
STRING (EMBL)CDX4
ZODIACCDX4
Ontologies - Pathways
QuickGOO14627
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II core promoter proximal region sequence-specific DNA binding  RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription  RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription  blood vessel development  protein binding  nucleus  transcription from RNA polymerase II promoter  anterior/posterior pattern specification  positive regulation of transcription from RNA polymerase II promoter  positive regulation of transcription from RNA polymerase II promoter  labyrinthine layer development  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II core promoter proximal region sequence-specific DNA binding  RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription  RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription  blood vessel development  protein binding  nucleus  transcription from RNA polymerase II promoter  anterior/posterior pattern specification  positive regulation of transcription from RNA polymerase II promoter  positive regulation of transcription from RNA polymerase II promoter  labyrinthine layer development  
NDEx NetworkCDX4
Atlas of Cancer Signalling NetworkCDX4
Wikipedia pathwaysCDX4
Orthology - Evolution
OrthoDB1046
Phylogenetic Trees/Animal Genes : TreeFamCDX4
HOVERGENO14627
HOGENOMO14627
Homologs : HomoloGeneCDX4
Homology/Alignments : Family Browser (UCSC)CDX4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDX4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDX4
dbVarCDX4
ClinVarCDX4
1000_GenomesCDX4 
Exome Variant ServerCDX4
ExAC (Exome Aggregation Consortium)CDX4 (select the gene name)
Genetic variants : HAPMAP1046
Genomic Variants (DGV)CDX4 [DGVbeta]
DECIPHER (Syndromes)X:72667090-72674421  
CONAN: Copy Number AnalysisCDX4 
Mutations
ICGC Data PortalCDX4 
TCGA Data PortalCDX4 
Broad Tumor PortalCDX4
OASIS PortalCDX4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCDX4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCDX4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CDX4
DgiDB (Drug Gene Interaction Database)CDX4
DoCM (Curated mutations)CDX4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CDX4 (select a term)
intoGenCDX4
Cancer3DCDX4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300025   
Orphanet
MedgenCDX4
Genetic Testing Registry CDX4
NextProtO14627 [Medical]
TSGene1046
GENETestsCDX4
Huge Navigator CDX4 [HugePedia]
snp3D : Map Gene to Disease1046
BioCentury BCIQCDX4
ClinGenCDX4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1046
Chemical/Pharm GKB GenePA26353
Clinical trialCDX4
Miscellaneous
canSAR (ICR)CDX4 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCDX4
EVEXCDX4
GoPubMedCDX4
iHOPCDX4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:58:58 CET 2017

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