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CDY1B (chromodomain protein, Y-linked, 1B)

Identity

Alias_nameschromodomain protein, Y-linked, 1B
Other aliasCDY
HGNC (Hugo) CDY1B
LocusID (NCBI) 253175
Atlas_Id 61672
Location Yq11.23  [Link to chromosome band Yq11]
Location_base_pair Starts at 27768264 and ends at 27770485 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CDY1B   23920
Cards
Entrez_Gene (NCBI)CDY1B  253175  chromodomain protein, Y-linked, 1B
AliasesCDY
GeneCards (Weizmann)CDY1B
Ensembl hg19 (Hinxton)ENSG00000172352 [Gene_View]  chrY:27768264-27770485 [Contig_View]  CDY1B [Vega]
Ensembl hg38 (Hinxton)ENSG00000172352 [Gene_View]  chrY:27768264-27770485 [Contig_View]  CDY1B [Vega]
ICGC DataPortalENSG00000172352
TCGA cBioPortalCDY1B
AceView (NCBI)CDY1B
Genatlas (Paris)CDY1B
WikiGenes253175
SOURCE (Princeton)CDY1B
Genetics Home Reference (NIH)CDY1B
Genomic and cartography
GoldenPath hg19 (UCSC)CDY1B  -     chrY:27768264-27770485 +  Yq11.23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CDY1B  -     Yq11.23   [Description]    (hg38-Dec_2013)
EnsemblCDY1B - Yq11.23 [CytoView hg19]  CDY1B - Yq11.23 [CytoView hg38]
Mapping of homologs : NCBICDY1B [Mapview hg19]  CDY1B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK292318 BC132929
RefSeq transcript (Entrez)NM_001003894 NM_001003895
RefSeq genomic (Entrez)NC_000024 NG_004755 NT_011903
Consensus coding sequences : CCDS (NCBI)CDY1B
Cluster EST : UnigeneHs.562095 [ NCBI ]
CGAP (NCI)Hs.562095
Alternative Splicing GalleryENSG00000172352
Gene ExpressionCDY1B [ NCBI-GEO ]   CDY1B [ EBI - ARRAY_EXPRESS ]   CDY1B [ SEEK ]   CDY1B [ MEM ]
Gene Expression Viewer (FireBrowse)CDY1B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)253175
GTEX Portal (Tissue expression)CDY1B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y6F8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y6F8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y6F8
Splice isoforms : SwissVarQ9Y6F8
PhosPhoSitePlusQ9Y6F8
Domaine pattern : Prosite (Expaxy)CHROMO_1 (PS00598)    CHROMO_2 (PS50013)   
Domains : Interpro (EBI)Chromo/shadow_dom    Chromo_dom_subgr    Chromo_domain    Chromodomain-like    Chromodomain_CS    ClpP/crotonase-like_dom    Crotonase_core_superfam   
Domain families : Pfam (Sanger)Chromo (PF00385)    ECH (PF00378)   
Domain families : Pfam (NCBI)pfam00385    pfam00378   
Domain families : Smart (EMBL)CHROMO (SM00298)  
Conserved Domain (NCBI)CDY1B
DMDM Disease mutations253175
Blocks (Seattle)CDY1B
PDB (SRS)2FBM   
PDB (PDBSum)2FBM   
PDB (IMB)2FBM   
PDB (RSDB)2FBM   
Structural Biology KnowledgeBase2FBM   
SCOP (Structural Classification of Proteins)2FBM   
CATH (Classification of proteins structures)2FBM   
SuperfamilyQ9Y6F8
Human Protein AtlasENSG00000172352
Peptide AtlasQ9Y6F8
HPRD16702
IPIIPI00069208   IPI00218948   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y6F8
IntAct (EBI)Q9Y6F8
FunCoupENSG00000172352
BioGRIDCDY1B
STRING (EMBL)CDY1B
ZODIACCDY1B
Ontologies - Pathways
QuickGOQ9Y6F8
Ontology : AmiGOhistone acetyltransferase activity  nucleus  spermatogenesis  histone acetylation  methylated histone binding  
Ontology : EGO-EBIhistone acetyltransferase activity  nucleus  spermatogenesis  histone acetylation  methylated histone binding  
NDEx NetworkCDY1B
Atlas of Cancer Signalling NetworkCDY1B
Wikipedia pathwaysCDY1B
Orthology - Evolution
OrthoDB253175
GeneTree (enSembl)ENSG00000172352
Phylogenetic Trees/Animal Genes : TreeFamCDY1B
HOVERGENQ9Y6F8
HOGENOMQ9Y6F8
Homologs : HomoloGeneCDY1B
Homology/Alignments : Family Browser (UCSC)CDY1B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDY1B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDY1B
dbVarCDY1B
ClinVarCDY1B
1000_GenomesCDY1B 
Exome Variant ServerCDY1B
ExAC (Exome Aggregation Consortium)CDY1B (select the gene name)
Genetic variants : HAPMAP253175
Genomic Variants (DGV)CDY1B [DGVbeta]
DECIPHER (Syndromes)Y:27768264-27770485  ENSG00000172352
CONAN: Copy Number AnalysisCDY1B 
Mutations
ICGC Data PortalCDY1B 
TCGA Data PortalCDY1B 
Broad Tumor PortalCDY1B
OASIS PortalCDY1B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCDY1B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCDY1B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CDY1B
DgiDB (Drug Gene Interaction Database)CDY1B
DoCM (Curated mutations)CDY1B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CDY1B (select a term)
intoGenCDY1B
Cancer3DCDY1B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCDY1B
Genetic Testing Registry CDY1B
NextProtQ9Y6F8 [Medical]
TSGene253175
GENETestsCDY1B
Huge Navigator CDY1B [HugePedia]
snp3D : Map Gene to Disease253175
BioCentury BCIQCDY1B
ClinGenCDY1B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD253175
Chemical/Pharm GKB GenePA134912535
Clinical trialCDY1B
Miscellaneous
canSAR (ICR)CDY1B (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCDY1B
EVEXCDY1B
GoPubMedCDY1B
iHOPCDY1B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:58:59 CET 2017

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