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CDY2A (chromodomain Y-linked 2A)

Identity

Alias_namesCDY2
chromodomain protein, Y chromosome, 2
chromodomain protein, Y-linked, 2
Other aliasCDY
HGNC (Hugo) CDY2A
LocusID (NCBI) 9426
Atlas_Id 61673
Location Yq11.222  [Link to chromosome band Yq11]
Location_base_pair Starts at 17878261 and ends at 17880220 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CDY2A   1810
Cards
Entrez_Gene (NCBI)CDY2A  9426  chromodomain Y-linked 2A
AliasesCDY; CDY2
GeneCards (Weizmann)CDY2A
Ensembl hg19 (Hinxton)ENSG00000182415 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182415 [Gene_View]  chrY:17878261-17880220 [Contig_View]  CDY2A [Vega]
ICGC DataPortalENSG00000182415
TCGA cBioPortalCDY2A
AceView (NCBI)CDY2A
Genatlas (Paris)CDY2A
WikiGenes9426
SOURCE (Princeton)CDY2A
Genetics Home Reference (NIH)CDY2A
Genomic and cartography
GoldenPath hg38 (UCSC)CDY2A  -     chrY:17878261-17880220 -  Yq11.222   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CDY2A  -     Yq11.222   [Description]    (hg19-Feb_2009)
EnsemblCDY2A - Yq11.222 [CytoView hg19]  CDY2A - Yq11.222 [CytoView hg38]
Mapping of homologs : NCBICDY2A [Mapview hg19]  CDY2A [Mapview hg38]
OMIM400018   415000   
Gene and transcription
Genbank (Entrez)AF080598 AK292233 BC111919
RefSeq transcript (Entrez)NM_004825
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CDY2A
Cluster EST : UnigeneHs.251375 [ NCBI ]
CGAP (NCI)Hs.251375
Alternative Splicing GalleryENSG00000182415
Gene ExpressionCDY2A [ NCBI-GEO ]   CDY2A [ EBI - ARRAY_EXPRESS ]   CDY2A [ SEEK ]   CDY2A [ MEM ]
Gene Expression Viewer (FireBrowse)CDY2A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9426
GTEX Portal (Tissue expression)CDY2A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y6F7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y6F7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y6F7
Splice isoforms : SwissVarQ9Y6F7
PhosPhoSitePlusQ9Y6F7
Domaine pattern : Prosite (Expaxy)CHROMO_1 (PS00598)    CHROMO_2 (PS50013)   
Domains : Interpro (EBI)Chromo/chromo_shadow_dom    Chromo_dom_subgr    Chromo_domain    Chromodomain-like    Chromodomain_CS    ClpP/crotonase-like_dom    Crotonase_core_superfam   
Domain families : Pfam (Sanger)Chromo (PF00385)    ECH_1 (PF00378)   
Domain families : Pfam (NCBI)pfam00385    pfam00378   
Domain families : Smart (EMBL)CHROMO (SM00298)  
Conserved Domain (NCBI)CDY2A
DMDM Disease mutations9426
Blocks (Seattle)CDY2A
PDB (SRS)2FW2   
PDB (PDBSum)2FW2   
PDB (IMB)2FW2   
PDB (RSDB)2FW2   
Structural Biology KnowledgeBase2FW2   
SCOP (Structural Classification of Proteins)2FW2   
CATH (Classification of proteins structures)2FW2   
SuperfamilyQ9Y6F7
Human Protein AtlasENSG00000182415
Peptide AtlasQ9Y6F7
HPRD02459
IPIIPI00181285   IPI00943174   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y6F7
IntAct (EBI)Q9Y6F7
FunCoupENSG00000182415
BioGRIDCDY2A
STRING (EMBL)CDY2A
ZODIACCDY2A
Ontologies - Pathways
QuickGOQ9Y6F7
Ontology : AmiGOhistone acetyltransferase activity  nucleus  spermatogenesis  histone acetylation  
Ontology : EGO-EBIhistone acetyltransferase activity  nucleus  spermatogenesis  histone acetylation  
NDEx NetworkCDY2A
Atlas of Cancer Signalling NetworkCDY2A
Wikipedia pathwaysCDY2A
Orthology - Evolution
OrthoDB9426
GeneTree (enSembl)ENSG00000182415
Phylogenetic Trees/Animal Genes : TreeFamCDY2A
HOVERGENQ9Y6F7
HOGENOMQ9Y6F7
Homologs : HomoloGeneCDY2A
Homology/Alignments : Family Browser (UCSC)CDY2A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDY2A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDY2A
dbVarCDY2A
ClinVarCDY2A
1000_GenomesCDY2A 
Exome Variant ServerCDY2A
ExAC (Exome Aggregation Consortium)CDY2A (select the gene name)
Genetic variants : HAPMAP9426
Genomic Variants (DGV)CDY2A [DGVbeta]
DECIPHERCDY2A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCDY2A 
Mutations
ICGC Data PortalCDY2A 
TCGA Data PortalCDY2A 
Broad Tumor PortalCDY2A
OASIS PortalCDY2A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCDY2A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCDY2A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CDY2A
DgiDB (Drug Gene Interaction Database)CDY2A
DoCM (Curated mutations)CDY2A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CDY2A (select a term)
intoGenCDY2A
Cancer3DCDY2A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM400018    415000   
Orphanet
MedgenCDY2A
Genetic Testing Registry CDY2A
NextProtQ9Y6F7 [Medical]
TSGene9426
GENETestsCDY2A
Target ValidationCDY2A
Huge Navigator CDY2A [HugePedia]
snp3D : Map Gene to Disease9426
BioCentury BCIQCDY2A
ClinGenCDY2A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9426
Chemical/Pharm GKB GenePA26355
Clinical trialCDY2A
Miscellaneous
canSAR (ICR)CDY2A (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCDY2A
EVEXCDY2A
GoPubMedCDY2A
iHOPCDY2A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:43:04 CEST 2017

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