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CDY2B (chromodomain protein, Y-linked, 2B)

Identity

Alias_nameschromodomain protein, Y-linked, 2B
Alias_symbol (synonym)CDY
Other alias
HGNC (Hugo) CDY2B
LocusID (NCBI) 203611
Atlas_Id 61674
Location Yq11.222  [Link to chromosome band Yq11]
Location_base_pair Starts at 20137668 and ends at 20139627 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CDY2B   23921
Cards
Entrez_Gene (NCBI)CDY2B  203611  chromodomain protein, Y-linked, 2B
AliasesCDY
GeneCards (Weizmann)CDY2B
Ensembl hg19 (Hinxton)ENSG00000129873 [Gene_View]  chrY:20137668-20139627 [Contig_View]  CDY2B [Vega]
Ensembl hg38 (Hinxton)ENSG00000129873 [Gene_View]  chrY:20137668-20139627 [Contig_View]  CDY2B [Vega]
ICGC DataPortalENSG00000129873
TCGA cBioPortalCDY2B
AceView (NCBI)CDY2B
Genatlas (Paris)CDY2B
WikiGenes203611
SOURCE (Princeton)CDY2B
Genetics Home Reference (NIH)CDY2B
Genomic and cartography
GoldenPath hg19 (UCSC)CDY2B  -     chrY:20137668-20139627 +  Yq11.222   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CDY2B  -     Yq11.222   [Description]    (hg38-Dec_2013)
EnsemblCDY2B - Yq11.222 [CytoView hg19]  CDY2B - Yq11.222 [CytoView hg38]
Mapping of homologs : NCBICDY2B [Mapview hg19]  CDY2B [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC069087 BC130426 BC130428
RefSeq transcript (Entrez)NM_001001722
RefSeq genomic (Entrez)NC_000024 NG_004636 NT_011875
Consensus coding sequences : CCDS (NCBI)CDY2B
Cluster EST : UnigeneHs.532657 [ NCBI ]
CGAP (NCI)Hs.532657
Alternative Splicing GalleryENSG00000129873
Gene ExpressionCDY2B [ NCBI-GEO ]   CDY2B [ EBI - ARRAY_EXPRESS ]   CDY2B [ SEEK ]   CDY2B [ MEM ]
Gene Expression Viewer (FireBrowse)CDY2B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)203611
GTEX Portal (Tissue expression)CDY2B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y6F7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y6F7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y6F7
Splice isoforms : SwissVarQ9Y6F7
PhosPhoSitePlusQ9Y6F7
Domaine pattern : Prosite (Expaxy)CHROMO_1 (PS00598)    CHROMO_2 (PS50013)   
Domains : Interpro (EBI)Chromo/shadow_dom    Chromo_dom_subgr    Chromo_domain    Chromodomain-like    Chromodomain_CS    ClpP/crotonase-like_dom    Crotonase_core_superfam   
Domain families : Pfam (Sanger)Chromo (PF00385)    ECH (PF00378)   
Domain families : Pfam (NCBI)pfam00385    pfam00378   
Domain families : Smart (EMBL)CHROMO (SM00298)  
Conserved Domain (NCBI)CDY2B
DMDM Disease mutations203611
Blocks (Seattle)CDY2B
PDB (SRS)2FW2   
PDB (PDBSum)2FW2   
PDB (IMB)2FW2   
PDB (RSDB)2FW2   
Structural Biology KnowledgeBase2FW2   
SCOP (Structural Classification of Proteins)2FW2   
CATH (Classification of proteins structures)2FW2   
SuperfamilyQ9Y6F7
Human Protein AtlasENSG00000129873
Peptide AtlasQ9Y6F7
HPRD16701
Protein Interaction databases
DIP (DOE-UCLA)Q9Y6F7
IntAct (EBI)Q9Y6F7
FunCoupENSG00000129873
BioGRIDCDY2B
STRING (EMBL)CDY2B
ZODIACCDY2B
Ontologies - Pathways
QuickGOQ9Y6F7
Ontology : AmiGOhistone acetyltransferase activity  nucleus  spermatogenesis  histone acetylation  
Ontology : EGO-EBIhistone acetyltransferase activity  nucleus  spermatogenesis  histone acetylation  
NDEx NetworkCDY2B
Atlas of Cancer Signalling NetworkCDY2B
Wikipedia pathwaysCDY2B
Orthology - Evolution
OrthoDB203611
GeneTree (enSembl)ENSG00000129873
Phylogenetic Trees/Animal Genes : TreeFamCDY2B
HOVERGENQ9Y6F7
HOGENOMQ9Y6F7
Homologs : HomoloGeneCDY2B
Homology/Alignments : Family Browser (UCSC)CDY2B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDY2B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDY2B
dbVarCDY2B
ClinVarCDY2B
1000_GenomesCDY2B 
Exome Variant ServerCDY2B
ExAC (Exome Aggregation Consortium)CDY2B (select the gene name)
Genetic variants : HAPMAP203611
Genomic Variants (DGV)CDY2B [DGVbeta]
DECIPHER (Syndromes)Y:20137668-20139627  ENSG00000129873
CONAN: Copy Number AnalysisCDY2B 
Mutations
ICGC Data PortalCDY2B 
TCGA Data PortalCDY2B 
Broad Tumor PortalCDY2B
OASIS PortalCDY2B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCDY2B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCDY2B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CDY2B
DgiDB (Drug Gene Interaction Database)CDY2B
DoCM (Curated mutations)CDY2B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CDY2B (select a term)
intoGenCDY2B
Cancer3DCDY2B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCDY2B
Genetic Testing Registry CDY2B
NextProtQ9Y6F7 [Medical]
TSGene203611
GENETestsCDY2B
Huge Navigator CDY2B [HugePedia]
snp3D : Map Gene to Disease203611
BioCentury BCIQCDY2B
ClinGenCDY2B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD203611
Chemical/Pharm GKB GenePA142672136
Clinical trialCDY2B
Miscellaneous
canSAR (ICR)CDY2B (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCDY2B
EVEXCDY2B
GoPubMedCDY2B
iHOPCDY2B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:58:59 CET 2017

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