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CDYL (chromodomain Y like)

Identity

Alias_nameschromodomain protein, Y chromosome-like
chromodomain protein, Y-like
Alias_symbol (synonym)DKFZP586C1622
CDYL1
Other alias
HGNC (Hugo) CDYL
LocusID (NCBI) 9425
Atlas_Id 53565
Location 6p25.1  [Link to chromosome band 6p25]
Location_base_pair Starts at 4776446 and ends at 4955544 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CDYL (6p25.1) / APP (21q21.3)CDYL (6p25.1) / CDKAL1 (6p22.3)CDYL (6p25.1) / CDYL (6p25.1)
CDYL (6p25.1) / CENPQ (6p12.3)CDYL (6p25.1) / EXOC2 (6p25.3)CDYL (6p25.1) / PSG3 (19q13.2)
CDYL (6p25.1) / ZZZ3 (1p31.1)GPC5 (13q31.3) / CDYL (6p25.1)LUZP1 (1p36.12) / CDYL (6p25.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CDYL   1811
Cards
Entrez_Gene (NCBI)CDYL  9425  chromodomain Y like
AliasesCDYL1
GeneCards (Weizmann)CDYL
Ensembl hg19 (Hinxton)ENSG00000153046 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000153046 [Gene_View]  ENSG00000153046 [Sequence]  chr6:4776446-4955544 [Contig_View]  CDYL [Vega]
ICGC DataPortalENSG00000153046
TCGA cBioPortalCDYL
AceView (NCBI)CDYL
Genatlas (Paris)CDYL
WikiGenes9425
SOURCE (Princeton)CDYL
Genetics Home Reference (NIH)CDYL
Genomic and cartography
GoldenPath hg38 (UCSC)CDYL  -     chr6:4776446-4955544 +  6p25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CDYL  -     6p25.1   [Description]    (hg19-Feb_2009)
EnsemblCDYL - 6p25.1 [CytoView hg19]  CDYL - 6p25.1 [CytoView hg38]
Mapping of homologs : NCBICDYL [Mapview hg19]  CDYL [Mapview hg38]
OMIM603778   
Gene and transcription
Genbank (Entrez)AF081258 AF081259 AK291601 AK296985 AL050164
RefSeq transcript (Entrez)NM_001143970 NM_001143971 NM_004824 NM_170752
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CDYL
Cluster EST : UnigeneHs.269092 [ NCBI ]
CGAP (NCI)Hs.269092
Alternative Splicing GalleryENSG00000153046
Gene ExpressionCDYL [ NCBI-GEO ]   CDYL [ EBI - ARRAY_EXPRESS ]   CDYL [ SEEK ]   CDYL [ MEM ]
Gene Expression Viewer (FireBrowse)CDYL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9425
GTEX Portal (Tissue expression)CDYL
Human Protein AtlasENSG00000153046-CDYL [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y232   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y232  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y232
Splice isoforms : SwissVarQ9Y232
PhosPhoSitePlusQ9Y232
Domaine pattern : Prosite (Expaxy)CHROMO_1 (PS00598)    CHROMO_2 (PS50013)   
Domains : Interpro (EBI)Chromo-like_dom_sf    Chromo/chromo_shadow_dom    Chromo_domain    Chromodomain_CS    ClpP/crotonase-like_dom_sf    Enoyl-CoA_hydra/iso    enoyl-CoA_hydra_C   
Domain families : Pfam (Sanger)Chromo (PF00385)    ECH_1 (PF00378)   
Domain families : Pfam (NCBI)pfam00385    pfam00378   
Domain families : Smart (EMBL)CHROMO (SM00298)  
Conserved Domain (NCBI)CDYL
DMDM Disease mutations9425
Blocks (Seattle)CDYL
PDB (SRS)2DNT    2GTR   
PDB (PDBSum)2DNT    2GTR   
PDB (IMB)2DNT    2GTR   
PDB (RSDB)2DNT    2GTR   
Structural Biology KnowledgeBase2DNT    2GTR   
SCOP (Structural Classification of Proteins)2DNT    2GTR   
CATH (Classification of proteins structures)2DNT    2GTR   
SuperfamilyQ9Y232
Human Protein Atlas [tissue]ENSG00000153046-CDYL [tissue]
Peptide AtlasQ9Y232
HPRD04803
IPIIPI00293963   IPI00655922   IPI00942198   IPI00334502   IPI00927254   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y232
IntAct (EBI)Q9Y232
FunCoupENSG00000153046
BioGRIDCDYL
STRING (EMBL)CDYL
ZODIACCDYL
Ontologies - Pathways
QuickGOQ9Y232
Ontology : AmiGOchromatin binding  transcription corepressor activity  transcription corepressor activity  protein binding  nucleus  nucleus  chromosome  spermatogenesis  spermatid development  nuclear speck  protein binding, bridging  methylated histone binding  methylated histone binding  random inactivation of X chromosome  crotonyl-CoA hydratase activity  negative regulation of peptidyl-lysine crotonylation  negative regulation of nucleic acid-templated transcription  
Ontology : EGO-EBIchromatin binding  transcription corepressor activity  transcription corepressor activity  protein binding  nucleus  nucleus  chromosome  spermatogenesis  spermatid development  nuclear speck  protein binding, bridging  methylated histone binding  methylated histone binding  random inactivation of X chromosome  crotonyl-CoA hydratase activity  negative regulation of peptidyl-lysine crotonylation  negative regulation of nucleic acid-templated transcription  
NDEx NetworkCDYL
Atlas of Cancer Signalling NetworkCDYL
Wikipedia pathwaysCDYL
Orthology - Evolution
OrthoDB9425
GeneTree (enSembl)ENSG00000153046
Phylogenetic Trees/Animal Genes : TreeFamCDYL
HOVERGENQ9Y232
HOGENOMQ9Y232
Homologs : HomoloGeneCDYL
Homology/Alignments : Family Browser (UCSC)CDYL
Gene fusions - Rearrangements
Fusion : QuiverCDYL
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDYL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDYL
dbVarCDYL
ClinVarCDYL
1000_GenomesCDYL 
Exome Variant ServerCDYL
ExAC (Exome Aggregation Consortium)ENSG00000153046
GNOMAD BrowserENSG00000153046
Varsome BrowserCDYL
Genetic variants : HAPMAP9425
Genomic Variants (DGV)CDYL [DGVbeta]
DECIPHERCDYL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCDYL 
Mutations
ICGC Data PortalCDYL 
TCGA Data PortalCDYL 
Broad Tumor PortalCDYL
OASIS PortalCDYL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCDYL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCDYL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CDYL
DgiDB (Drug Gene Interaction Database)CDYL
DoCM (Curated mutations)CDYL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CDYL (select a term)
intoGenCDYL
Cancer3DCDYL(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603778   
Orphanet
DisGeNETCDYL
MedgenCDYL
Genetic Testing Registry CDYL
NextProtQ9Y232 [Medical]
TSGene9425
GENETestsCDYL
Target ValidationCDYL
Huge Navigator CDYL [HugePedia]
snp3D : Map Gene to Disease9425
BioCentury BCIQCDYL
ClinGenCDYL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9425
Chemical/Pharm GKB GenePA26356
Clinical trialCDYL
Miscellaneous
canSAR (ICR)CDYL (select the gene name)
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCDYL
EVEXCDYL
GoPubMedCDYL
iHOPCDYL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 10:57:28 CET 2018

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