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CDYL2 (chromodomain Y like 2)

Identity

Alias_nameschromodomain Y-like protein 2
Alias_symbol (synonym)FLJ38866
Other aliasPCCP1
HGNC (Hugo) CDYL2
LocusID (NCBI) 124359
Atlas_Id 61675
Location 16q23.2  [Link to chromosome band 16q23]
Location_base_pair Starts at 80597899 and ends at 80804278 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CDYL2 (16q23.2) / CDYL2 (16q23.2)CDYL2 (16q23.2) / PSMB1 (6q27)CDYL2 (16q23.2) / VEPH1 (3q25.31)
CMIP (16q23.2) / CDYL2 (16q23.2)SERINC5 (5q14.1) / CDYL2 (16q23.2)CMIP CDYL2
SERINC5 CDYL2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CDYL2   23030
Cards
Entrez_Gene (NCBI)CDYL2  124359  chromodomain Y like 2
AliasesPCCP1
GeneCards (Weizmann)CDYL2
Ensembl hg19 (Hinxton)ENSG00000166446 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166446 [Gene_View]  chr16:80597899-80804278 [Contig_View]  CDYL2 [Vega]
ICGC DataPortalENSG00000166446
TCGA cBioPortalCDYL2
AceView (NCBI)CDYL2
Genatlas (Paris)CDYL2
WikiGenes124359
SOURCE (Princeton)CDYL2
Genetics Home Reference (NIH)CDYL2
Genomic and cartography
GoldenPath hg38 (UCSC)CDYL2  -     chr16:80597899-80804278 -  16q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CDYL2  -     16q23.2   [Description]    (hg19-Feb_2009)
EnsemblCDYL2 - 16q23.2 [CytoView hg19]  CDYL2 - 16q23.2 [CytoView hg38]
Mapping of homologs : NCBICDYL2 [Mapview hg19]  CDYL2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK023660 AK096185 AW297969 AX781670 AX781671
RefSeq transcript (Entrez)NM_152342
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CDYL2
Cluster EST : UnigeneHs.373908 [ NCBI ]
CGAP (NCI)Hs.373908
Alternative Splicing GalleryENSG00000166446
Gene ExpressionCDYL2 [ NCBI-GEO ]   CDYL2 [ EBI - ARRAY_EXPRESS ]   CDYL2 [ SEEK ]   CDYL2 [ MEM ]
Gene Expression Viewer (FireBrowse)CDYL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)124359
GTEX Portal (Tissue expression)CDYL2
Human Protein AtlasENSG00000166446-CDYL2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N8U2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N8U2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N8U2
Splice isoforms : SwissVarQ8N8U2
PhosPhoSitePlusQ8N8U2
Domaine pattern : Prosite (Expaxy)CHROMO_1 (PS00598)    CHROMO_2 (PS50013)   
Domains : Interpro (EBI)Chromo/chromo_shadow_dom    Chromo_domain    Chromodomain-like    Chromodomain_CS    ClpP/crotonase-like_dom    Crotonase_core_superfam   
Domain families : Pfam (Sanger)Chromo (PF00385)    ECH_1 (PF00378)   
Domain families : Pfam (NCBI)pfam00385    pfam00378   
Domain families : Smart (EMBL)CHROMO (SM00298)  
Conserved Domain (NCBI)CDYL2
DMDM Disease mutations124359
Blocks (Seattle)CDYL2
PDB (SRS)2MJ8    4HAE    5JJZ   
PDB (PDBSum)2MJ8    4HAE    5JJZ   
PDB (IMB)2MJ8    4HAE    5JJZ   
PDB (RSDB)2MJ8    4HAE    5JJZ   
Structural Biology KnowledgeBase2MJ8    4HAE    5JJZ   
SCOP (Structural Classification of Proteins)2MJ8    4HAE    5JJZ   
CATH (Classification of proteins structures)2MJ8    4HAE    5JJZ   
SuperfamilyQ8N8U2
Human Protein Atlas [tissue]ENSG00000166446-CDYL2 [tissue]
Peptide AtlasQ8N8U2
HPRD10819
IPIIPI00178475   
Protein Interaction databases
DIP (DOE-UCLA)Q8N8U2
IntAct (EBI)Q8N8U2
FunCoupENSG00000166446
BioGRIDCDYL2
STRING (EMBL)CDYL2
ZODIACCDYL2
Ontologies - Pathways
QuickGOQ8N8U2
Ontology : AmiGOcatalytic activity  protein binding  nucleus  metabolic process  methylated histone binding  
Ontology : EGO-EBIcatalytic activity  protein binding  nucleus  metabolic process  methylated histone binding  
NDEx NetworkCDYL2
Atlas of Cancer Signalling NetworkCDYL2
Wikipedia pathwaysCDYL2
Orthology - Evolution
OrthoDB124359
GeneTree (enSembl)ENSG00000166446
Phylogenetic Trees/Animal Genes : TreeFamCDYL2
HOVERGENQ8N8U2
HOGENOMQ8N8U2
Homologs : HomoloGeneCDYL2
Homology/Alignments : Family Browser (UCSC)CDYL2
Gene fusions - Rearrangements
Fusion: TCGA_MDACCCMIP CDYL2
Fusion: TCGA_MDACCSERINC5 CDYL2
Tumor Fusion PortalCDYL2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDYL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDYL2
dbVarCDYL2
ClinVarCDYL2
1000_GenomesCDYL2 
Exome Variant ServerCDYL2
ExAC (Exome Aggregation Consortium)ENSG00000166446
GNOMAD BrowserENSG00000166446
Genetic variants : HAPMAP124359
Genomic Variants (DGV)CDYL2 [DGVbeta]
DECIPHERCDYL2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCDYL2 
Mutations
ICGC Data PortalCDYL2 
TCGA Data PortalCDYL2 
Broad Tumor PortalCDYL2
OASIS PortalCDYL2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCDYL2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCDYL2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CDYL2
DgiDB (Drug Gene Interaction Database)CDYL2
DoCM (Curated mutations)CDYL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CDYL2 (select a term)
intoGenCDYL2
Cancer3DCDYL2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCDYL2
MedgenCDYL2
Genetic Testing Registry CDYL2
NextProtQ8N8U2 [Medical]
TSGene124359
GENETestsCDYL2
Target ValidationCDYL2
Huge Navigator CDYL2 [HugePedia]
snp3D : Map Gene to Disease124359
BioCentury BCIQCDYL2
ClinGenCDYL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD124359
Chemical/Pharm GKB GenePA134903387
Clinical trialCDYL2
Miscellaneous
canSAR (ICR)CDYL2 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCDYL2
EVEXCDYL2
GoPubMedCDYL2
iHOPCDYL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:33:00 CET 2017

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