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CEACAM16 (carcinoembryonic antigen related cell adhesion molecule 16)

Identity

Alias_namescarcinoembryonic antigen-related cell adhesion molecule 16
Alias_symbol (synonym)DFNA4B
Other aliasCEAL2
HGNC (Hugo) CEACAM16
LocusID (NCBI) 388551
Atlas_Id 56611
Location 19q13.31  [Link to chromosome band 19q13]
Location_base_pair Starts at 44699151 and ends at 44710714 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
AD000671.1 () / CEACAM16 (19q13.32)ATG5 (6q21) / CEACAM16 (19q13.32)C20orf194 (20p13) / CEACAM16 (19q13.32)
CLPTM1 (19q13.32) / CEACAM16 (19q13.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CEACAM16   31948
Cards
Entrez_Gene (NCBI)CEACAM16  388551  carcinoembryonic antigen related cell adhesion molecule 16
AliasesCEAL2; DFNA4B
GeneCards (Weizmann)CEACAM16
Ensembl hg19 (Hinxton)ENSG00000213892 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000213892 [Gene_View]  chr19:44699151-44710714 [Contig_View]  CEACAM16 [Vega]
ICGC DataPortalENSG00000213892
TCGA cBioPortalCEACAM16
AceView (NCBI)CEACAM16
Genatlas (Paris)CEACAM16
WikiGenes388551
SOURCE (Princeton)CEACAM16
Genetics Home Reference (NIH)CEACAM16
Genomic and cartography
GoldenPath hg38 (UCSC)CEACAM16  -     chr19:44699151-44710714 +  19q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CEACAM16  -     19q13.31   [Description]    (hg19-Feb_2009)
EnsemblCEACAM16 - 19q13.31 [CytoView hg19]  CEACAM16 - 19q13.31 [CytoView hg38]
Mapping of homologs : NCBICEACAM16 [Mapview hg19]  CEACAM16 [Mapview hg38]
OMIM614591   614614   
Gene and transcription
Genbank (Entrez)BC144608 BC156855 BC160178 BF589367 EU021223
RefSeq transcript (Entrez)NM_001039213
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CEACAM16
Cluster EST : UnigeneHs.456381 [ NCBI ]
CGAP (NCI)Hs.456381
Alternative Splicing GalleryENSG00000213892
Gene ExpressionCEACAM16 [ NCBI-GEO ]   CEACAM16 [ EBI - ARRAY_EXPRESS ]   CEACAM16 [ SEEK ]   CEACAM16 [ MEM ]
Gene Expression Viewer (FireBrowse)CEACAM16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388551
GTEX Portal (Tissue expression)CEACAM16
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2WEN9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2WEN9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2WEN9
Splice isoforms : SwissVarQ2WEN9
PhosPhoSitePlusQ2WEN9
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_sub2   
Domain families : Pfam (Sanger)Ig_2 (PF13895)   
Domain families : Pfam (NCBI)pfam13895   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  
Conserved Domain (NCBI)CEACAM16
DMDM Disease mutations388551
Blocks (Seattle)CEACAM16
SuperfamilyQ2WEN9
Human Protein AtlasENSG00000213892
Peptide AtlasQ2WEN9
IPIIPI00373966   IPI00937836   
Protein Interaction databases
DIP (DOE-UCLA)Q2WEN9
IntAct (EBI)Q2WEN9
FunCoupENSG00000213892
BioGRIDCEACAM16
STRING (EMBL)CEACAM16
ZODIACCEACAM16
Ontologies - Pathways
QuickGOQ2WEN9
Ontology : AmiGOextracellular space  sensory perception of sound  stereocilium tip  identical protein binding  
Ontology : EGO-EBIextracellular space  sensory perception of sound  stereocilium tip  identical protein binding  
NDEx NetworkCEACAM16
Atlas of Cancer Signalling NetworkCEACAM16
Wikipedia pathwaysCEACAM16
Orthology - Evolution
OrthoDB388551
GeneTree (enSembl)ENSG00000213892
Phylogenetic Trees/Animal Genes : TreeFamCEACAM16
HOVERGENQ2WEN9
HOGENOMQ2WEN9
Homologs : HomoloGeneCEACAM16
Homology/Alignments : Family Browser (UCSC)CEACAM16
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCEACAM16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CEACAM16
dbVarCEACAM16
ClinVarCEACAM16
1000_GenomesCEACAM16 
Exome Variant ServerCEACAM16
ExAC (Exome Aggregation Consortium)CEACAM16 (select the gene name)
Genetic variants : HAPMAP388551
Genomic Variants (DGV)CEACAM16 [DGVbeta]
DECIPHERCEACAM16 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCEACAM16 
Mutations
ICGC Data PortalCEACAM16 
TCGA Data PortalCEACAM16 
Broad Tumor PortalCEACAM16
OASIS PortalCEACAM16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCEACAM16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCEACAM16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CEACAM16
DgiDB (Drug Gene Interaction Database)CEACAM16
DoCM (Curated mutations)CEACAM16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CEACAM16 (select a term)
intoGenCEACAM16
Cancer3DCEACAM16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614591    614614   
Orphanet
MedgenCEACAM16
Genetic Testing Registry CEACAM16
NextProtQ2WEN9 [Medical]
TSGene388551
GENETestsCEACAM16
Target ValidationCEACAM16
Huge Navigator CEACAM16 [HugePedia]
snp3D : Map Gene to Disease388551
BioCentury BCIQCEACAM16
ClinGenCEACAM16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388551
Chemical/Pharm GKB GenePA142672131
Clinical trialCEACAM16
Miscellaneous
canSAR (ICR)CEACAM16 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCEACAM16
EVEXCEACAM16
GoPubMedCEACAM16
iHOPCEACAM16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:57:33 CEST 2017

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