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CEACAM18 (carcinoembryonic antigen related cell adhesion molecule 18)

Identity

Alias_namescarcinoembryonic antigen-related cell adhesion molecule 18
Other alias-
HGNC (Hugo) CEACAM18
LocusID (NCBI) 729767
Atlas_Id 61677
Location 19q13.41  [Link to chromosome band 19q13]
Location_base_pair Starts at 51478643 and ends at 51490605 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CEACAM18   31949
Cards
Entrez_Gene (NCBI)CEACAM18  729767  carcinoembryonic antigen related cell adhesion molecule 18
Aliases
GeneCards (Weizmann)CEACAM18
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr19:51478643-51490605 [Contig_View]  CEACAM18 [Vega]
TCGA cBioPortalCEACAM18
AceView (NCBI)CEACAM18
Genatlas (Paris)CEACAM18
WikiGenes729767
SOURCE (Princeton)CEACAM18
Genetics Home Reference (NIH)CEACAM18
Genomic and cartography
GoldenPath hg38 (UCSC)CEACAM18  -     chr19:51478643-51490605 +  19q13.41   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CEACAM18  -     19q13.41   [Description]    (hg19-Feb_2009)
EnsemblCEACAM18 - 19q13.41 [CytoView hg19]  CEACAM18 - 19q13.41 [CytoView hg38]
Mapping of homologs : NCBICEACAM18 [Mapview hg19]  CEACAM18 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001080405 NM_001278392
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CEACAM18
Cluster EST : UnigeneHs.653111 [ NCBI ]
CGAP (NCI)Hs.653111
Gene ExpressionCEACAM18 [ NCBI-GEO ]   CEACAM18 [ EBI - ARRAY_EXPRESS ]   CEACAM18 [ SEEK ]   CEACAM18 [ MEM ]
Gene Expression Viewer (FireBrowse)CEACAM18 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)729767
GTEX Portal (Tissue expression)CEACAM18
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MTB9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MTB9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MTB9
Splice isoforms : SwissVarA8MTB9
PhosPhoSitePlusA8MTB9
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_sub2   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  
Conserved Domain (NCBI)CEACAM18
DMDM Disease mutations729767
Blocks (Seattle)CEACAM18
SuperfamilyA8MTB9
Peptide AtlasA8MTB9
IPIIPI00893126   IPI00983575   
Protein Interaction databases
DIP (DOE-UCLA)A8MTB9
IntAct (EBI)A8MTB9
BioGRIDCEACAM18
STRING (EMBL)CEACAM18
ZODIACCEACAM18
Ontologies - Pathways
QuickGOA8MTB9
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCEACAM18
Atlas of Cancer Signalling NetworkCEACAM18
Wikipedia pathwaysCEACAM18
Orthology - Evolution
OrthoDB729767
Phylogenetic Trees/Animal Genes : TreeFamCEACAM18
HOVERGENA8MTB9
HOGENOMA8MTB9
Homologs : HomoloGeneCEACAM18
Homology/Alignments : Family Browser (UCSC)CEACAM18
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCEACAM18 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CEACAM18
dbVarCEACAM18
ClinVarCEACAM18
1000_GenomesCEACAM18 
Exome Variant ServerCEACAM18
ExAC (Exome Aggregation Consortium)CEACAM18 (select the gene name)
Genetic variants : HAPMAP729767
Genomic Variants (DGV)CEACAM18 [DGVbeta]
DECIPHERCEACAM18 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCEACAM18 
Mutations
ICGC Data PortalCEACAM18 
TCGA Data PortalCEACAM18 
Broad Tumor PortalCEACAM18
OASIS PortalCEACAM18 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCEACAM18  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCEACAM18
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CEACAM18
DgiDB (Drug Gene Interaction Database)CEACAM18
DoCM (Curated mutations)CEACAM18 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CEACAM18 (select a term)
intoGenCEACAM18
Cancer3DCEACAM18(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCEACAM18
Genetic Testing Registry CEACAM18
NextProtA8MTB9 [Medical]
TSGene729767
GENETestsCEACAM18
Target ValidationCEACAM18
Huge Navigator CEACAM18 [HugePedia]
snp3D : Map Gene to Disease729767
BioCentury BCIQCEACAM18
ClinGenCEACAM18
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD729767
Chemical/Pharm GKB GenePA142672132
Clinical trialCEACAM18
Miscellaneous
canSAR (ICR)CEACAM18 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCEACAM18
EVEXCEACAM18
GoPubMedCEACAM18
iHOPCEACAM18
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:43:05 CEST 2017

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