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CEACAM19 (carcinoembryonic antigen related cell adhesion molecule 19)

Identity

Alias_namescarcinoembryonic antigen-related cell adhesion molecule 19
Alias_symbol (synonym)CEAL1
Other aliasCEACM19
HGNC (Hugo) CEACAM19
LocusID (NCBI) 56971
Atlas_Id 53540
Location 19q13.31  [Link to chromosome band 19q13]
Location_base_pair Starts at 44671452 and ends at 44684355 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
EMC6 (17p13.2) / CEACAM19 (19q13.31)TOMM40 (19q13.32) / CEACAM19 (19q13.31)ZNF277 (7q31.1) / CEACAM19 (19q13.31)
TMEM93 CEACAM19 19q13.31ZNF277 7q31.1 / CEACAM19 19q13.31

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  t(7;19)(q31;q13) ZNF277/CEACAM19
t(17;19)(p13;q13) EMC6/CEACAM19


External links

Nomenclature
HGNC (Hugo)CEACAM19   31951
Cards
Entrez_Gene (NCBI)CEACAM19  56971  carcinoembryonic antigen related cell adhesion molecule 19
AliasesCEACM19; CEAL1
GeneCards (Weizmann)CEACAM19
Ensembl hg19 (Hinxton)ENSG00000186567 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186567 [Gene_View]  ENSG00000186567 [Sequence]  chr19:44671452-44684355 [Contig_View]  CEACAM19 [Vega]
ICGC DataPortalENSG00000186567
TCGA cBioPortalCEACAM19
AceView (NCBI)CEACAM19
Genatlas (Paris)CEACAM19
WikiGenes56971
SOURCE (Princeton)CEACAM19
Genetics Home Reference (NIH)CEACAM19
Genomic and cartography
GoldenPath hg38 (UCSC)CEACAM19  -     chr19:44671452-44684355 +  19q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CEACAM19  -     19q13.31   [Description]    (hg19-Feb_2009)
CEACAM19 - 19q13.31 [CytoView hg19]  CEACAM19 - 19q13.31 [CytoView hg38]
Mapping of homologs : NCBICEACAM19 [Mapview hg19]  CEACAM19 [Mapview hg38]
OMIM606691   
Gene and transcription
Genbank (Entrez)AK027157 AK128234 AK291588 AL390165 AY358394
RefSeq transcript (Entrez)NM_001127893 NM_020219
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CEACAM19
Cluster EST : UnigeneHs.416925 [ NCBI ]
CGAP (NCI)Hs.416925
Alternative Splicing GalleryENSG00000186567
Gene ExpressionCEACAM19 [ NCBI-GEO ]   CEACAM19 [ EBI - ARRAY_EXPRESS ]   CEACAM19 [ SEEK ]   CEACAM19 [ MEM ]
Gene Expression Viewer (FireBrowse)CEACAM19 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56971
GTEX Portal (Tissue expression)CEACAM19
Human Protein AtlasENSG00000186567-CEACAM19 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z692   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z692  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z692
Splice isoforms : SwissVarQ7Z692
PhosPhoSitePlusQ7Z692
Domains : Interpro (EBI)Ig-like_dom_sf    Ig-like_fold    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Conserved Domain (NCBI)CEACAM19
DMDM Disease mutations56971
Blocks (Seattle)CEACAM19
SuperfamilyQ7Z692
Human Protein Atlas [tissue]ENSG00000186567-CEACAM19 [tissue]
Peptide AtlasQ7Z692
HPRD16229
IPIIPI00376238   IPI00419809   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z692
IntAct (EBI)Q7Z692
FunCoupENSG00000186567
BioGRIDCEACAM19
STRING (EMBL)CEACAM19
ZODIACCEACAM19
Ontologies - Pathways
QuickGOQ7Z692
Ontology : AmiGOprotein binding  integral component of membrane  
Ontology : EGO-EBIprotein binding  integral component of membrane  
NDEx NetworkCEACAM19
Atlas of Cancer Signalling NetworkCEACAM19
Wikipedia pathwaysCEACAM19
Orthology - Evolution
OrthoDB56971
GeneTree (enSembl)ENSG00000186567
Phylogenetic Trees/Animal Genes : TreeFamCEACAM19
HOGENOMQ7Z692
Homologs : HomoloGeneCEACAM19
Homology/Alignments : Family Browser (UCSC)CEACAM19
Gene fusions - Rearrangements
Fusion : MitelmanEMC6/CEACAM19 [17p13.2/19q13.31]  [t(17;19)(p13;q13)]  
Fusion : MitelmanZNF277/CEACAM19 [7q31.1/19q13.31]  [t(7;19)(q31;q13)]  
Fusion PortalTMEM93 CEACAM19 19q13.31 OV
Fusion PortalZNF277 7q31.1 CEACAM19 19q13.31 KIRC
Fusion : QuiverCEACAM19
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCEACAM19 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CEACAM19
dbVarCEACAM19
ClinVarCEACAM19
1000_GenomesCEACAM19 
Exome Variant ServerCEACAM19
ExAC (Exome Aggregation Consortium)ENSG00000186567
GNOMAD BrowserENSG00000186567
Varsome BrowserCEACAM19
Genetic variants : HAPMAP56971
Genomic Variants (DGV)CEACAM19 [DGVbeta]
DECIPHERCEACAM19 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCEACAM19 
Mutations
ICGC Data PortalCEACAM19 
TCGA Data PortalCEACAM19 
Broad Tumor PortalCEACAM19
OASIS PortalCEACAM19 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCEACAM19  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCEACAM19
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CEACAM19
DgiDB (Drug Gene Interaction Database)CEACAM19
DoCM (Curated mutations)CEACAM19 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CEACAM19 (select a term)
intoGenCEACAM19
Cancer3DCEACAM19(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606691   
Orphanet
DisGeNETCEACAM19
MedgenCEACAM19
Genetic Testing Registry CEACAM19
NextProtQ7Z692 [Medical]
TSGene56971
GENETestsCEACAM19
Target ValidationCEACAM19
Huge Navigator CEACAM19 [HugePedia]
snp3D : Map Gene to Disease56971
BioCentury BCIQCEACAM19
ClinGenCEACAM19
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56971
Chemical/Pharm GKB GenePA142672133
Clinical trialCEACAM19
Miscellaneous
canSAR (ICR)CEACAM19 (select the gene name)
DataMed IndexCEACAM19
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCEACAM19
EVEXCEACAM19
GoPubMedCEACAM19
iHOPCEACAM19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 21 15:40:11 CET 2019

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